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GrainGenes Marker Report: Xcdo113

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Locus
Xcdo113
Type
RFLP
Chromosome
3A
Map
Oat-2001-KxO_2292
Oat-KxO-22106.7
Wheat-Composite2004-3A137
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat-2001-KxO
Wheat, Composite, 2004
Probe
CDO113
Homology
P5CS_ORYSAe-value: 2e-07DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHETASE (P5CS) [INCLUDES: GLUTAMATE 5-KINASE (GAMMA-GLUTAMYL KINASE) (GK); GAMMA-GLUTAMYL PHOSPHATE REDUCTASE (GPR) (GLUTAMATE-5-SEMIALDEHYDE DEHYDROGENASE) (GLUTAMYL-GAMMA-SEMIALDEHYDE DEHYDROGENASE)]
Image
CDO113 KO autoradiogram
Possible Orthologs
aCDO113
[ Show all 9 ]



Probe for Locus
CDO113
Locus
CDO113B
[ Show all 8 ]
Synonym
SynonymHAR35_15808
HAR35_16190
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439054
BE439101
CDO113_WHE2C0061
CDO113_WHE2C0062
Polymorphism
CDO113 DraI
Linkage Group
[b 7L]
3
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.8
PCR size
1.8
Clone Vector
pBluSK
pBS
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO113 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09
Kleinhofs, Andris96.05.08

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