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GrainGenes Marker Report: Xcdo1328

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Locus
Xcdo1328
Type
RFLP
Chromosome
4R
Chromosome Arm
4RL
Map
Avena-Sorrells-B53
[ Show all 6 ]
[ Show Nearby Loci ]
QTL with Locus Marker
BYDV, KxO-10
Map Data
Diploid Oat, Cornell2
[ Show all 6 ]
Probe
CDO1328
Homology
BAB02685.1e-value: 3e-27(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
BAB02685.1e-value: 8e-41(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
CDO1328
CDO1328b
Xcdo1328b
cdo1328



Probe for Locus
CDO1328
Locus
CDO1328b
Xcdo1328
CDO1328
Xcdo1328b
cdo1328
Synonym
SynonymHAR35_4885
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439066
[ Show all 7 ]
Polymorphism
CDO1328 EcoRI
Linkage Group
2L
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1.1
PCR size
1.1
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1328 BROWS autoradiogram
CDO1328 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09