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GrainGenes Marker Report: Xcdo20-5A

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Locus
Xcdo20-5A
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
Ta-Synthetic/Opata-5A128.2
Ta-Synthetic/Opata-BARC-5A112.7
Ta-Synthetic/Opata-DR-5A128.2
Ta-Synthetic/Opata-GPW-5A165.6
[ Show Nearby Loci ]
QTL with Locus Marker
Qkb.cnl-5A.1
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, DR Genes
Wheat, Synthetic x Opata, GPW
Probe
CDO20
Homology
AC051633_5e-value: 1e-25(AC051633) putative ubiquitin protein [Oryza sativa]
AC051633_5e-value: 4e-14(AC051633) putative ubiquitin protein [Oryza sativa]
Image
CDO20 SO autoradiogram
Possible Orthologs
CDO020
[ Show all 11 ]



Probe for Locus
CDO20
Locus
Xcdo20-5A
[ Show all 12 ]
Synonym
SynonymHAR35_17893
HAR35_1872
Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439040
[ Show all 6 ]
Polymorphism
CDO20 DraI
CDO20 EcoRV
CDO20 EcoRI
CDO20 HindIII
CDO20 XbaI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
1.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO20 KO autoradiogram
CDO20 SO autoradiogram
Data Source
Sorrells, Mark E.96.07

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