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GrainGenes Marker Report: Xcdo98

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Locus
Xcdo98
Type
RFLP
Chromosome
1A
Chromosome Arm
1HS
Map
Avena-Sorrells-A48.8
Hbulbosum-PB1xPB11-129
Wheat-Composite2004-1A50
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
H. bulbosum, PB1 x PB11
Wheat, Composite, 2004
Probe
CDO98
Homology
AF170971_1e-value: 3.7(AF170971) LeoA [Escherichia coli]
BAB11510.1e-value: 2e-35(AB015469) contains similarity to transportin-SR~gene_id:K19B1.21 [Arabidopsis thaliana]
Possible Orthologs
CDO98
[ Show all 8 ]



Probe for Locus
CDO98
Locus
CDO98
[ Show all 9 ]
Synonym
SynonymHAR35_19183
HAR35_27651
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439310
[ Show all 7 ]
Polymorphism
CDO98 EcoRI
CDO98 DraI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
PCR size
2.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO98 BROWSSM autoradiogram
CDO98 SO autoradiogram
Data Source
Sorrells, Mark E.96.07