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GrainGenes Marker Report: cdo1385c

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Locus
cdo1385c
Type
RFLP
Map
Oat-2003-OglexMAM17-5_2319
Oat-2004-KxO-RGA_KO7_10_2873.41
Oat-2004-OT328xDumont_47
Oat-2006-KxO-RGA_KO7_10_2817.5
Oat-KxO/2003-7_10_2878.9
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2003-OglexMAM17-5
Oat-2004-KxO-RGA
Oat-2004-OT328xDumont
Oat-2006-KxO-RGA
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 3.44 cM on map Oat-KxO/2003-7_10_28
Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs
cdo1385a
[ Show all 17 ]



Probe for Locus
CDO1385
Locus
Xcdo1385A
[ Show all 18 ]
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439299
CDO1385_WHE05F02.s1
CN180770
Polymorphism
CDO1385 DraI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
1.4
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1385 KO autoradiogram
Data Source
Sorrells, Mark E.96.07

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