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GrainGenes Marker Report: cdo1467a

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Locus
cdo1467a
Type
RFLP
Map
Oat-1997-KxO-QTL_1713.9
[ Show all 7 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QEFLD.2002-OxT_32
QLFLD.2002-OxT_32
Map Data
Oat, KxO, 2003
[ Show all 7 ]
Species
Avena sativa
Probe
CDO1467
Homology
AAF55250.1e-value: 0.27(AE003711) CG5552 gene product [Drosophila melanogaster]
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remark
Marker placement value = 3.18 cM on map Oat-KxO/2003-17
Marker is not a framework marker on map Oat-KxO/2003-17
Possible Orthologs
cdo1467
[ Show all 9 ]



Probe for Locus
CDO1467
Locus
Xcdo1467A
[ Show all 10 ]
Synonym
SynonymHAR35_5747
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439161
BE439230
CDO1467_WHE03E07.r1
CDO1467_WHE03E07.s1
CN180771
Polymorphism
CDO1467 DraI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
0.8
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1467 KO autoradiogram
Data Source
Sorrells, Mark E.96.07

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