Query (optional)   in Class  

GrainGenes Marker Report: cdo484a

[ Printable Version ]  [ Submit comment/correction ]

Locus
cdo484a
Type
RFLP
Map
Oat-2004-TxM_1817
Oat-KxO/2003-22_44+1893.2
[ Show Nearby Loci ]
QTL with Locus Marker
QBN-A.TxM-18
QTK-A.TxM-18
Map Data
Oat, KxO, 2003
Oat-2004-TxM
Probe
CDO484
Homology
NP_033047.1e-value: 3.8retinoic acid induced 1 [Mus musculus]
BAA92155.1e-value: 0.50(AB007818) glycine-rich protein [Citrus unshiu]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-22_44+18
Marker is a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
CDO484
[ Show all 15 ]



Probe for Locus
CDO484
Locus
CDO484
[ Show all 18 ]
Synonym
SynonymHAR35_16073
HAR35_16075
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
OatUni-ZAPXR
Type
cDNA
Sequence
BE439064
[ Show all 6 ]
Polymorphism
CDO484 EcoRI
CDO484 EcoRV
Linkage Group
2DL, 4AL, 5BL,
2L4L5L[b 7L]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1.6
PCR size
1.6
Clone Vector
pBluSK
BS-SK-
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO484 BROWS autoradiogram
CDO484 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09