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GrainGenes Marker Report: pAKp3

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Locus
pAKp3
Synonym
SynonymABG312
ABG313A
ABG313B
ASE1C
Tel6S



Probe
pAKp3
Locus
ABG312
[ Show all 9 ]
Synonym
Other nameABG313
ASE1
XBA1
Clone Location
Kleinhofs, Andris
Data Source
Kleinhofs, Andris96.08



Locus for Probe
ABG312
Type
RFLP
Synonym
SynonymABG312
pAKp3
Chromosome
1 (7H), Steptoe x Morex, Harrington x TR306
2H
7H
Chromosome Arm
1P (7HS), Steptoe x Morex, Harrington x TR306
7HS
Map
Barley-Consensus-7H-68.4
[ Show all 11 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 14 ]
Probe
ABG312
pAKp3
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Kleinhofs, Andris96.08
Remark
Number of populations contributing to the placement of ABG312 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
ABG312-7H
ABG312a
ABG312b
ABG312c
ABG312d



Locus for Probe
ABG313A
Type
RFLP
Synonym
Correct nameTel2S
SynonymABG313
pAKp3
Chromosome
2 (2H), Steptoe x Morex
2H
Chromosome Arm
2P (2HS), Steptoe x Morex
Map
Barley-Consensus2-2H8.6
[ Show all 12 ]
[ Show Nearby Loci ]
In QTL
QMe.StMo-2H.1
Map Data
Barley consensus 2
[ Show all 12 ]
Species
Hordeum vulgare
Probe
ABG313
pAKp3
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Blake, Tom05.04.19
Kleinhofs, Andris96.08
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG313B



Locus for Probe
ABG313B
Type
RFLP
Synonym
SynonymABG313
pAKp3
Chromosome
4 (4H), Steptoe x Morex
4H
Chromosome Arm
4P (4HS), Steptoe x Morex
Map
Barley-Consensus2-4H12.4
[ Show all 14 ]
[ Show Nearby Loci ]
In QTL
QBgnm.StMo-4H
QDp.StMo-4H
QHt.StMo-4H.1
Map Data
Barley consensus 2
[ Show all 14 ]
Species
Hordeum vulgare
Probe
ABG313
pAKp3
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Kleinhofs, Andris96.08
Remark
Number of populations contributing to the placement of ABG313B in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG313A



Locus for Probe
Tel5L
Type
RFLP
Synonym
Other nameTel5M
Map
Hordeum-Bins-1H153
[ Show Nearby Loci ]
Map Data
Barley, BinMap 2005
Probe
pAKp3
Data Source
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin



Locus for Probe
Tel6S
Type
RFLP
Synonym
Other nameTel6P
SynonympAKp3
Chromosome
6H
Map
Hordeum-Bins-6H0
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 7 ]
Probe
pAKp3
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Close, Timothy J.



Locus for Probe
XBA1
Type
RFLP
Chromosome
5 (1H), Harrington x TR306
Chromosome Arm
5M (1HL), Harrington x TR306
Map
Barley-Consensus2-1H146.7
[ Show Nearby Loci ]
Map Data
Barley consensus 2
Barley, HxT
Probe
pAKp3
Associated Gene
Tel5M (Hordeum)
Gene Class
Telomere
Data Source
Kleinhofs, Andris96.08



Locus for Probe
ASE1A
Type
RFLP
Chromosome
2 (2H), Steptoe x Morex
2H
Chromosome Arm
2P (2HS), Steptoe x Morex
Map
Barley-Consensus2-2H7.3
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 6 ]
Probe
ASE1
pAKp3
Associated Gene
Tel2P (Hordeum)
Gene Class
Telomere
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Data Source
Kleinhofs, Andris96.08
Remark
Number of populations contributing to the placement of ASE1A in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ASE1B
ASE1C



Locus for Probe
ASE1B
Type
RFLP
Chromosome
6 (6H), Steptoe x Morex
6H
Chromosome Arm
6P (6HS), Steptoe x Morex
Map
Barley-Consensus2-6H0
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 7 ]
Probe
ASE1
pAKp3
Associated Gene
Tel6P (Hordeum)
Gene Class
Telomere
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Data Source
Kleinhofs, Andris96.08
Remark
Number of populations contributing to the placement of ASE1B in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ASE1A
ASE1C



Locus for Probe
ASE1C
Type
RFLP
Synonym
SynonymASE1
pAKp3
Chromosome
4 (4H), Steptoe x Morex
4H
Chromosome Arm
4M (4HL), Steptoe x Morex
Map
Barley-Consensus2-4H129
[ Show all 11 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 11 ]
Probe
ASE1
pAKp3
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Kleinhofs, Andris96.08
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ASE1A
ASE1B

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