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GrainGenes Marker Report: pKG1490

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Locus
pKG1490
Synonym
SynonymCab1
Cab2



Probe
pKG1490
Locus
Cab2
XCab2
Cab1
XCab1.2
XCab1.1
Synonym
Please seeCAB-2
Reference
ReferenceBarkardottir RB et al. (1987) Expression of selected nuclear genes during leaf development in barley. Developmental Genetics 8:495-511.
Linkage Group
Barley 7 (5H)
Source Gene Class
Chlorophyll a/b binding protein
Source Species
Hordeum vulgare
Insert Size
0.9
Clone Vector
pBR327
Excision Enzyme
PstI
Clone Location
Gausing, Kirsten
Kleinhofs, Andris
Clone Authority
Gausing, Kirsten
Data Source
Dubcovsky, Jorge94.10.19
Kleinhofs, Andris96.05.08



Locus for Probe
Cab1
Type
RFLP
Synonym
SynonympKG1490
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Consensus-5H87.1
[ Show all 9 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 11 ]
Probe
pKG1490
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex



Locus for Probe
Cab2
Type
RFLP
Synonym
SynonymCAB-2
pKG1490
Chromosome
1H
Chromosome Arm
1HL
Map
Barley-Consensus-1H103.1
[ Show all 15 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 15 ]
Probe
CAB-2
pKG1490
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Blake, Tom05.04.19
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
XCab2



Locus for Probe
XCab1.1
Type
RFLP
Map
Tm-Dubcovsky2-5A86.7
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
pKG1490
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg701-5A.1 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous.



Locus for Probe
XCab1.2
Type
RFLP
Map
Tm-Dubcovsky2-5A52.2
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
pKG1490
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg701-5A.2 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous.



Locus for Probe
XCab2
Type
RFLP
Chromosome
1A
Chromosome Arm
1AL
1L
Map
Tm-Dubcovsky2-1A47.6
TmTa-Dubcovsky-1A59.6
Triticeae-Sorrells-1110
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116  Mapped_with_probe  pKG1490
Triticeae consensus
Triticum, CS-G1777 DS1A^m^(1A) RSL
Probe
pKG1490
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg701 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous.
Possible Orthologs
Cab2