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GrainGenes Marker Report: scind10455

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Locus
scind10455
Type
Indel
Microsatellite
Synonym
Other nameBest524
SynonymABC10445_L01R01
Chromosome
4H
Map
Barley, B73xCPI-4H68.7
[ Show all 8 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 8 ]
Species
Hordeum vulgare
Probe
ABC10445_L01R01
ABC10455_L01R01
scind10455
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Russell, Joanne
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys



Probe for Locus
ABC10445_L01R01
Locus
scind10455
Data at Germinate
ABC10445
Data at PLEXdb
Barley1_10445
General Remarks
Estimated product size = 194
BarleySNP type = EST Indel
Technology platform used = Radioisotope Labelled PCR Separation
Affymetrix contig name = abc10445
Type
STS
PCR primers
5' GATCCCCCTAAAAGCAGACC
5' CTGCCTAGTCCCTGCATCTC
Sequence
Barley1_10445
Source Species
Hordeum vulgare
Data Source
Russell, Joanne



Probe for Locus
ABC10455_L01R01
Locus
scind10455



Probe
scind10455
Locus
scind10455
scind10455.4Ha
scind10455.4Hb
Reference
ReferenceHearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391.
Type
Indel
PCR primers
GATCCCCCTAAAAGCAGACC
CTGCCTAGTCCCTGCATCTC



Locus for Probe
scind10455.4Ha
Type
Microsatellite
Map
Barley, B73xCPI-4H68.7
[ Show Nearby Loci ]
Map Data
Barley, B73xCPI
Probe
scind10455



Locus for Probe
scind10455.4Hb
Type
Microsatellite
Map
Barley, B73xCPI-4H68.7
[ Show Nearby Loci ]
Map Data
Barley, B73xCPI
Probe
scind10455

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