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GrainGenes Marker Report: scssr10226

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Locus
scssr10226
Type
Microsatellite
SNP
Synonym
Other nameCtig6965
SynonymABC10226_L01R01
Chromosome
2H
Map
Barley, B73xCPI-2H40.8
[ Show all 9 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 9 ]
Species
Hordeum vulgare
Probe
ABC10226_L01R01
scssr10226
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source
Russell, Joanne
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant
Insert contains repeat (GA)9
Developing laboratory = SCRI (R. Waugh)



Probe for Locus
ABC10226_L01R01
Locus
scssr10226
Data at Germinate
ABC10226
Data at PLEXdb
Barley1_10226
General Remarks
Estimated product size = 186
BarleySNP type = Contig Indel
Technology platform used = Radioisotope Labelled PCR Separation
Affymetrix contig name = abc10226
PCR primers
5' TTCCAAGAGAAAGTGCATGG
5' ACATCGCCAGTATGTTTTCC
Sequence
Barley1_10226
Source Species
Hordeum vulgare
Data Source
Russell, Joanne



Probe
scssr10226
Locus
scssr10226
Reference
ReferenceHearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRamsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Type
SSR
EST