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GrainGenes Marker Report: scssr10559

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Locus
scssr10559
Type
Microsatellite
SNP
Synonym
Other nameCtig5110
SynonymABC10559_L01R01
Chromosome
3H
Map
Hordeum-Consensus2005-SNP-3H17.885
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 7 ]
Species
Hordeum vulgare
Probe
ABC10559_L01R01
scssr10559
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source
Russell, Joanne
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 6 ]



Probe for Locus
ABC10559_L01R01
Locus
scssr10559
Data at Germinate
ABC10559
General Remarks
Estimated product size = 211
BarleySNP type = Contig Indel
Technology platform used = Radioisotope Labelled PCR Separation
Affymetrix contig name = abc10559
PCR primers
5' CATTTCCTCTCCCCTTGC
5' CTCACCTCCTGCCGATCC
Source Species
Hordeum vulgare
Data Source
Russell, Joanne



Probe
scssr10559
Locus
scssr10559
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRamsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Type
SSR
PCR primers
CATTTCCTCTCCCCTTGC
CTCACCTCCTGCCGATCC