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GrainGenes Marker Report: BCD1235

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Locus
bcd1235
Type
RFLP
Map
Oat-KxO/2003-2510.4
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-25
Marker is a framework marker on map Oat-KxO/2003-25
Possible Orthologs
bcd1235a
[ Show all 17 ]



Probe
BCD1235
Locus
[ Hide all but 1 of 18 ]
Xbcd1235-5A
Xbcd1235
bcd1235a
bcd1235b
bcd1235c
bcd1235d
Xbcd1235-5A.1
Xbcd1235-5A.2
Xbcd1235-5B
Xbcd1235.1
Xbcd1235a
Xbcd1235b
Xbcd1235.2
bcd1235
BCD1235
BCD1235A
BCD1235C
BCD1235D
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438907
BCD1235_WHE04B03.s1
Polymorphism
BCD1235 DraI
BCD1235 EcoRI
BCD1235 EcoRV
BCD1235 XbaI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
0.7
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1235 KO autoradiogram
BCD1235 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
bcd1235a
Type
RFLP
Map
Oat-OxT-521.5
[ Show Nearby Loci ]
Map Data
Oat, OxT
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
bcd1235b
Type
RFLP
Map Data
Oat, OxT
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
bcd1235c
Type
RFLP
Map
Oat-OxT-662.6
[ Show Nearby Loci ]
Map Data
Oat, OxT
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
bcd1235d
Type
RFLP
Map
Oat-OxT-210.7
[ Show Nearby Loci ]
Map Data
Oat, OxT
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
BCD1235D
Type
RFLP
Synonym
Other namebcd1235d
Map
Oat-2016-Consensus-356.2
Oat-2016-OxT_4b91
Oat-2018-Consensus_Mrg0356.2
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2016-OxT
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
BCD1235
Type
RFLP
Synonym
Other namebcd1235
Map
Oat-2009-KxO_19_25_2766
Oat-2016-Consensus-370.5
Oat-2018-Consensus_Mrg0370.5
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
BCD1235A
Type
RFLP
Synonym
Other namebcd1235a
Map
Oat-2016-Consensus-1931.3
Oat-2018-Consensus_Mrg1931.3
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
BCD1235C
Type
RFLP
Synonym
Other namebcd1235c
Map
Oat-2016-Consensus-2365.3
Oat-2016-OxT_181.9
Oat-2018-Consensus_Mrg2365.3
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2016-OxT
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235
Type
RFLP
Map
Oat-KxO-250
Oat-KxO/AFLP-25-320
Oat-KxO/Q-250
[ Show Nearby Loci ]
In QTL
BYDV, KxO-25
[ Show all 6 ]
Map Data
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Image
BCD1235 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235-5A
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
5AL, CS x CS-TDIC DS5A24.8
Ta-Synthetic/Opata-DR-5A56.3
Ta-Synthetic/Opata-GPW-5A157.5
Ta-Synthetic/Opata-SSR2-5A106
[ Show Nearby Loci ]
Breakpoint Interval
5AL23-0.87-1.00
Map Data
5AL, CS x CS-TDIC DS5A
Wheat, Synthetic x Opata, DR Genes
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, SSR 2
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235-5A.1
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
Ta-Synthetic/Opata-5A58.3
Ta-Synthetic/Opata-BARC-5A60
Ta-Synthetic/Opata-SSR-5A87.9
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, SSR
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235-5A.2
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
Ta-Synthetic/Opata-5A118.9
Ta-Synthetic/Opata-BARC-5A106.4
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235-5B
Type
RFLP
Chromosome
5B
Chromosome Arm
5BL
Map
5BL, CS, 0.75-0.79 interval40
Tturgidum-JKxC-5B151.8
Tturgidum-JKxC2-5B238.9
[ Show Nearby Loci ]
Breakpoint Interval
5BL9-0.76-0.79
Map Data
5BL, CS, 0.75-0.79 interval
T. turgidum, JK x Cham1
T. turgidum, JK x Cham1, 2
Species
Triticum aestivum
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Reference
ReferenceFaris JD et al. (2000) Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154:823-835.
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235.1
Type
RFLP
Chromosome
5A
Map
Wheat-Composite2004-5A51
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235.2
Type
RFLP
Chromosome
5A
Map
Wheat-Composite2004-5A88
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235a
Type
RFLP
Chromosome
5A
Map
Wheat-Composite2004-5A53
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]



Locus for Probe
Xbcd1235b
Type
RFLP
Chromosome
5A
Map
Wheat-Composite2004-5A82
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1235
Homology
T01197e-value: 9e-21pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana (GB:X99348) [Arabidopsis thaliana]
Possible Orthologs
bcd1235
[ Show all 17 ]