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GrainGenes Marker Report: CDO795

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Locus
CDO795
Type
RFLP
Chromosome
4 (4H)
4H
Chromosome Arm
4HS
Map
Barley-consensus-2003-4H32.2
[ Show all 15 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 16 ]
Species
Hordeum vulgare
Probe
CDO795
QTL Linked with Locus
Sprouting 3
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO795 in the Barley, Consensus 2006 DArT maps = 2
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec
Possible Orthologs
[ Hide all but 1 of 12 ]
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Probe
CDO795
Locus
CDO795
[ Show all 13 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
OatUni-ZAPXR
Type
cDNA
Sequence
AA231718
AA231719
Polymorphism
CDO795 EcoRI
CDO795 EcoRV
Linkage Group
[b 4L]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1.5
PCR size
1.5
Clone Vector
pBluSK
BS-SK-
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO795 BROWS autoradiogram
CDO795 KO autoradiogram
CDO795 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
cdo795bp
Type
RFLP
Map
Oat-2004-TxM_1518
[ Show Nearby Loci ]
In QTL
QOL-A.TxM-15
QPN-H.TxM-15
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795xp



Locus for Probe
cdo795xp
Type
RFLP
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp



Locus for Probe
cdo795a
Type
RFLP
Map
Oat-KxO/2003-24_26_3475.2
Oat-OxT-17.2
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat, OxT
Probe
CDO795
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-24_26_34
Marker is a framework marker on map Oat-KxO/2003-24_26_34
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
cdo795b
Type
RFLP
Map
Oat-KxO/2003-22_44+18152
Oat-OxT-3161
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat, OxT
Probe
CDO795
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-22_44+18
Marker is a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
CDO795A
Type
RFLP
Synonym
Other namecdo795a
Map
Oat-2009-KxO_24_26_3461
Oat-2016-Consensus-2178.1
Oat-2016-KxO_340.6
Oat-2018-Consensus_Mrg2178.1
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
CDO795B
Type
RFLP
Synonym
Other namecdo795b
Map
Oat-2009-KxO_22_44_18144
Oat-2016-Consensus-2186.4
Oat-2018-Consensus_Mrg2186.4
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
cdo795
cdo795bp
cdo795xp



Locus for Probe
cdo795
Type
RFLP
Map
Wheat, Yr genes and QTL 4B33.5
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795bp
cdo795xp



Locus for Probe
Xcdo795
Type
RFLP
Chromosome
2R
4B
Chromosome Arm
2RS
Map
Avena-Sorrells-E33.6
Rye-2009-Consensus-2R7
Secale-UxE-26.8
Wheat-Composite2004-4B16
[ Show Nearby Loci ]
In QTL
QPm.ipk-4B
Map Data
Diploid Oat, Cornell2
Rye, UC90 x E-line
Rye_2009_consensus
Wheat, Composite, 2004
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795-4B
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
Xcdo795-4B
Type
RFLP
Chromosome
4B
Chromosome Arm
4BS
Map
Ta-Synthetic/Opata-4B11.6
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
[ Show all 7 ]
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795A
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
Xcdo795A
Type
RFLP
Map
Oat-KxO-2424.7
Oat-KxO/AFLP-24-2662
Oat-KxO/Q-2424.7
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Probe
CDO795
Image
CDO795 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795B
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
Xcdo795B
Type
RFLP
Map
Oat-KxO-2225.6
Oat-KxO/Q-2225.6
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat, KxO/QTL
Probe
CDO795
Image
CDO795 KO autoradiogram
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcnl.CDO795
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp



Locus for Probe
Xcnl.CDO795
Type
RFLP
Chromosome
4H
Map
Hordeum-Heun-4H124.1
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO795
Possible Orthologs
[ Hide all but 1 of 12 ]
CDO795
cdo795a
cdo795b
Xcdo795
Xcdo795-4B
Xcdo795A
Xcdo795B
CDO795A
CDO795B
cdo795
cdo795bp
cdo795xp