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GrainGenes Marker Report: IWB5915

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Locus
IWB5915
Type
SNP
Synonym
Other nameBS00003879
BS00003879_51
ReferenceWang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796.
Chromosome Arm
5B
Map
[ Hide all but 1 of 6 ]
Wheat, Yr genes and QTL 5B50.4
Wheat_2014_90KSNP_5B71.6438
Wheat_AB, Simeto x Molise Colli 5B_249.2
Wheat_AB, Svevo x Zavitan 5B87.1
Wheat_AB_2015_Consensus-5B100.3
Wheat_Yr_2021-5B119.52
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
[ Show all 6 ]
Species
Triticum aestivum
Probe
BS00003879_51
Reference
ReferenceWang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796.


Probe
BS00003879_51
Locus
IWB5915
BS00003879
BS00003879_51
Reference
ReferenceWang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796.
ReferenceAllen AM et al. (2011) Transcipt-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.) Plant Biotechnology Journal 9:1086-1099.
Type
SNP
KASP
PCR primers
FAM 5' CGGAGCGCCTCTCCGACATA 3'
Common 5' GACGCCGGTGCAAATATCGCGAT 3'
VIC 5' GGAGCGCCTCTCCGACATC 3'
Common 5' GACGCCGGTGCAAATATCGCGAT 3'
Specificity
FAM primer specific to A allele, and VIC primer specific to C allele.
Sequence
BS00003879_51


Locus for Probe
BS00003879
Type
SNP
Synonym
Other nameIWB5915
Map
Wheat, Avalon x Cadenza 5B197.3
Wheat_2017_LRC-5B27.2
[ Show Nearby Loci ]
In QTL
5B-AGBMNitr-ParW352-WATDE0047-RHHN12-BS00003879
5B-BMNUtE-ParW352-WATDE0047-RHHN12-BS00003879
5B-NHI-ParW468-WATDE0061-RHHN12-BS00003879
Map Data
Wheat, Avalon x Cadenza
Wheat_2017_LRC
Probe
BS00003879_51
Reference
ReferenceCheng S et al. (2024) Harnessing Landrace Diversity Empowers Wheat Breeding for Climate Resilience Nature.


Locus for Probe
BS00003879_51
Type
SNP
Map
[ Hide all but 1 of 23 ]
Wheat-2018-NAM1-BxDharwarDry_5B71.9
Wheat-2018-NAM10-BxPI9791_5B95.5
Wheat-2018-NAM11-BxCItr4175_5B80.6
Wheat-2018-NAM12-BxCItr11223_5B72.4
Wheat-2018-NAM13-BxPI262611_5B109.9
Wheat-2018-NAM14-BxPI70613_5B78.6
Wheat-2018-NAM15-BxCItr7635_5B66.9
Wheat-2018-NAM16-BxPI8813_5B83.4
Wheat-2018-NAM17-BxPI82469_5B84.3
Wheat-2018-NAM18-BxCItr15144_5B87.8
Wheat-2018-NAM19-BxPI43355_5B129.5
Wheat-2018-NAM20-BxPI94567_5B45.3
Wheat-2018-NAM23-BxPI192001_5B86.6
Wheat-2018-NAM27-BxPI192569_5B85.2
Wheat-2018-NAM28-BxPI210945_5B61.8
Wheat-2018-NAM29-BxPI220431_5B70.2
Wheat-2018-NAM3-BxPI283147_5B99.1
Wheat-2018-NAM4-BxPI366716_5B174.18
Wheat-2018-NAM5-BxPI382150_5B77.7
Wheat-2018-NAM6-BxPI470817_5B133.4
Wheat-2018-NAM7-BxPI565213_5B104.4
Wheat-2018-NAM8-BxPBW343_5B61.1
Wheat-2018-NAM9-BxVida_5B87.1
[ Show Nearby Loci ]
Map Data
Wheat-2018-NAM1-Berkut-x-DharwarDry
[ Show all 23 ]
Species
Triticum aestivum
Probe
BS00003879_51

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