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GrainGenes Marker Report: POPA1_0965

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Locus
POPA1_0965
Type
SNP
Synonym
Other name11_10965
BOPA1_11_10965
BOPA1_8365-454
Synonym11_10965
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H23.3
Hordeum-OPA-2009-7H29.82
Hordeum-OPA123-2008-7H29.82
Hordeum-OPAConsensus-2011-7H24.15
Hordeum-OWB-OPA2008-7H29.663
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_18883
i_11_10965
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0965
Marker name in barley OPA1 = 11_10965
Original SNP name = 8365-454
Most representative HarvEST:Barley Assembly #32 Unigene = 8365
Most representative HarvEST:Barley Assembly #35 Unigene = 18883
HarvEST Unigene 35 Probe Set = Contig10778_at; Contig10778_s_at; HA22G19r_at
Unigene 35 Rice Locus = LOC_Os08g29200
Description for best rice BLAST hit to Unigene 35 member = polygalacturonase-1 non-catalytic beta subunit precursor, putative, expressed; E value = 8E-44
Original SNP name = U35_2705_1795
HarvEST Unigene 35 Probe Set = Contig10778_at, Contig10778_s_at, HA22G19r_at
Description for best rice BLAST hit to Unigene 35 member = protein polygalacturonase-1 non-catalytic beta subunit precursor, putative, expressed; E value = 8E-44
BLAST hit in the rice genome = polygalacturonase-1 non-catalytic beta subunit precursor, putative, expressed



Probe for Locus
HAR35_18883
Locus
POPA1_0965
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10965
Locus
POPA1_0965
11_10965
BOPA1_8365-454
BOPA1_11_10965
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10965



Locus for Probe
BOPA1_8365-454
Type
SNP
Synonym
Other name11_10965
BOPA1_11_10965
POPA1_0965
Species
Hordeum vulgare
Probe
i_11_10965
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10965
Type
SNP
Synonym
Other name11_10965
BOPA1_8365-454
POPA1_0965
Map
Barley-Core-2014_7H29.62
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10965
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_10965
Type
SNP
Synonym
Other nameBOPA1_11_10965
BOPA1_8365-454
POPA1_0965
SynonymPOPA1_0965
Species
Hordeum vulgare
Probe
i_11_10965
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.