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GrainGenes Marker Report: POPA3_1048

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Locus
POPA3_1048
Type
SNP
Synonym
Other name12_31048
BOPA2_12_31048
Synonym12_31048
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H95.6
Hordeum-OPA-2009-6H97.39
Hordeum-OPA123-2008-6H97.39
Hordeum-OPAConsensus-2011-6H112.39
Hordeum-OWB-OPA2008-6H119.497
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_14536
i_12_31048
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1048
Marker name in barley OPA1 = 12_31048
Original SNP name = UCI_Dhn7_908
Most representative HarvEST:Barley Assembly #32 Unigene = 1161
Most representative HarvEST:Barley Assembly #35 Unigene = 14536
HarvEST Unigene 35 Probe Set = Contig1709_at; Contig1710_at
Unigene 35 Rice Locus = LOC_Os11g26790
Description for best rice BLAST hit to Unigene 35 member = water stress-inducible protein Rab21, putative, expressed; E value = 8E-55
Marker name in barley Pilot OPA3 = 3_1048
Marker name in barley OPA2 = 12_31048
HarvEST Unigene 35 Probe Set = Contig1709_at, Contig1710_at
Description for best rice BLAST hit to Unigene 35 member = protein water stress-inducible protein Rab21, putative, expressed; E value = 8E-55
BLAST hit in the rice genome = water stress-inducible protein Rab21, putative, expressed



Probe for Locus
HAR35_14536
Locus
POPA3_1044
[ Show all 6 ]
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31048
Locus
POPA3_1048
12_31048
BOPA2_12_31048
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31048



Locus for Probe
12_31048
Type
SNP
Synonym
Other nameBOPA2_12_31048
POPA3_1048
SynonymPOPA3_1048
Species
Hordeum vulgare
Probe
i_12_31048
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31048
Type
SNP
Synonym
Other name12_31048
POPA3_1048
Map
Barley-Core-2014_6H102.03
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31048
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.