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GrainGenes Marker Report: JR050

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Probe
JR050
Locus
Amy2
Reference
ReferenceKhursheed B and Rogers JC (1988) Barley alpha amylase genes quantitative comparison of steady-state messenger RNA levels from individual members of the two different families in aleurone cells Journal of Biological Chemistry 263:18953-18960.
Linkage Group
Barley 1 (7H)
Source Gene Class
alpha-Amylase
Source Species
Hordeum vulgare
Insert Size
1.5
Clone Vector
pSP64
Excision Enzyme
PstI
Clone Location
Kleinhofs, Andris
Clone Authority
Rogers, W.J.
Data Source
Kleinhofs, Andris96.05.08



Locus for Probe
Amy2
Type
Gene
RFLP
Synonym
SynonymAmy 2 (Hordeum)
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Consensus-7H6.2
[ Show all 18 ]
[ Show Nearby Loci ]
In QTL
QAa.StMo-7H.3
QDp.HaMo-7H.2
QDp.StMo-7H.3
QDrm.StMo-7H
Map Data
Barley consensus
[ Show all 18 ]
Species
Hordeum vulgare
Probe
JR050
Associated Gene
Amy 2 (Hordeum)
Amy2 (Hordeum)
Candidate Gene
Amy2 (Hordeum)
Gene Class
alpha-Amylase
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
[ Show all 6 ]
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Number of populations contributing to the placement of Amy2 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
alpha-Amy-2-7A
[ Show all 9 ]

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