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GrainGenes Marker Report: k00077

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Locus
k00077
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H181.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
baak12f01
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
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Restriction enzyme used for CAPS analysis = FokI
SNP = A/G
SNP structure (UNICODE) = AGAAGGTGGGRTGATTATCAG
Parent 1 SNP sequence = AGAAGGTGGGATGATTATCAG
Parent 2 SNP sequence = AGAAGGTGGGGTGATTATCAG
Recognized sequence for CAPs locus = GGATGNNNNNNNNN



Probe for Locus
baak12f01
Locus
k00077
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE)
Type
PCR
PCR primers
Left 5' - ACCATCTTCTCCACCCAGTG
Right 5' - TACTTCAGCACCGTCTTCCC
Sequence
AV909893
PCR size
418