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GrainGenes Marker Report: k00102

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Locus
k00102
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H129.4
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
baak16a11
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
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Restriction enzyme used for CAPS analysis = HapII
SNP = C/T
SNP structure (UNICODE) = CTCTGTGAACYGGGCTCCTAA
Parent 1 SNP sequence = CTCTGTGAACCGGGCTCCTAA
Parent 2 SNP sequence = CTCTGTGAACTGGGCTCCTAA
Recognized sequence for CAPs locus = CCGG



Probe for Locus
baak16a11
Locus
k00102
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = iron/ascorbate-dependent oxidoreductase [Hordeum vulgare]
Type
PCR
PCR primers
Left 5' - TTCAGTGGGATTCTGTTCCC
Right 5' - CGATTCCGTAGTACCCCTCA
Sequence
BJ455267
PCR size
374