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GrainGenes Marker Report: Ltp1

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Gene
ltp1
Gene Product
non-specific lipid transport protein 1
non-specific lipid transport protein 1 precursor
Sequence
AM901399
AM901399_1.cds



Locus
Ltp1
Type
Gene
RFLP
Synonym
SynonymLtp1 (Hordeum)
Chromosome
5H
Chromosome Arm
5HS
Map
Barley-Consensus-5H-3.2
[ Show all 14 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 14 ]
Species
Hordeum vulgare
Probe
A1f
Associated Gene
Ltp1 (Hordeum)
Gene Class
Lipid transfer protein
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'



Probe for Locus
A1f
Locus
Ltp1
Ltp1-5H
Synonym
Other nameAlf
Ltp1
SynonymHAR35_37326
HAR35_42600
External Databases
DDBJ
EMBL
GenBank
Reference
ReferenceSkriver K et al. (1992) Structure and expression of the barley lipid transfer protein gene LTP1 Plant Molecular Biology 18:585-589.
ReferenceMundy J and Rogers JC (1986) Selective expression of a probable Amylase-protease inhibitor in barley Hordeum-vulgare aleurone cells comparison to the barley Amylase-subtilisin inhibitor Planta 169:51-63.
General Remarks
ORF 351 bp interrupted by 133 bp intron. Original cDNA sequence published in Planta is identical to the ORF sequence determined from the genomic clone.
Appears to be a single copy gene. However, several weakly hybridizing bands indicate that there are other related sequences in the barley genome.
Sequence
X60292
Linkage Group
Barley 7 (5H), near centromere
Source Gene Class
Lipid transfer protein
Source Gene
Ltp1 (Hordeum)
Source Species
Hordeum vulgare
Insert Size
0.6
Clone Vector
pUC
Excision Enzyme
XbaI
HindIII
Clone Location
Kleinhofs, Andris
Clone Authority
Rogers, J.C.
Data Source
Kleinhofs, Andris96.05.08



Gene Associated with Locus
Ltp1 (Hordeum)
Gene Class
Lipid transfer protein
Locus
Ltp1
Reference
ReferenceKleinhofs A and Kilian A (1994) DNA based markers in plants. 1.
ReferenceCannell M et al. (1992) Chromosomal assignment of genes in barley using telosomic wheat-barley addition lines. Genome 35:17-23.
Chromosome
5H
Clone
A1f
Alf
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Probe
Ltp1
Synonym
Please seeA1f
Remarks
lipid transfer protein
Type
Genomic
Linkage Group
7L
Source Species
Hordeum vulgare
Insert Size
0.6
Clone Vector
pUC
Excision Enzyme
HindIII
XbaI
Clone Location
Kleinhofs, Andris
Data Source
ATMI92.09