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GrainGenes Marker Report: nud (Hordeum)

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Gene
nud (Hordeum)
Full Name
Naked caryopsis
Synonym
Synonymn (Hordeum)
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class
Naked karyopsis
Allele
Nud (Hordeum)
nud (Hordeum)
Locus
CDO673
mn
nud
Chromosome
7H
Image
Barley, Nud (hulled) phenotype
Barley, nud (naked) phenotype
Data Source
Franckowiak, Jerome D.96.10



Locus Associated with Gene
CDO673
Type
RFLP
Synonym
Synonymnud (Hordeum)
Chromosome
1H
7H
Chromosome Arm
7HS
Map
Barley-consensus-2003-1H117.8
[ Show all 17 ]
[ Show Nearby Loci ]
In QTL
QPg.PrNu-5H.1
Map Data
Barley consensus
[ Show all 16 ]
Probe
CDO673
Associated Gene
nud (Hordeum)
Homology
AC012188_16e-value: 2e-23(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
D81906e-value: 2.1probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491]
AC012188_16e-value: 2e-21(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Gene Class
Naked karyopsis
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO673 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
cdo673a
[ Show all 8 ]



Locus Associated with Gene
mn
Type
Gene
Synonym
Correct namen
Chromosome
7H
Map
Barley-Consensus2-7H78
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 7 ]
Species
Hordeum vulgare
Probe
Mapped_by_function
Associated Gene
nud (Hordeum)
Gene Class
Naked karyopsis
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L94 x Vada, Vada x SusPtrit, Oregon Wolfe Barleys, Cebada Capa x SusPtrit
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Vada x SusPtrit



Locus Associated with Gene
nud
Type
Gene
Synonym
Synonymnud (Hordeum)
Chromosome
7H
Map
Hordeum-Consensus2005-SNP-7H104.158
[ Show all 9 ]
[ Show Nearby Loci ]
Map Data
Barley genes 2
[ Show all 9 ]
Species
Hordeum vulgare
Associated Gene
nud (Hordeum)
Gene Class
Naked karyopsis
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.



Locus
nud (Hordeum)
Synonym
SynonymCDO673
nud

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