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GrainGenes Marker Report: nud (Hordeum)

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Gene
nud (Hordeum)
Full Name
Naked caryopsis
Synonym
Synonymn (Hordeum)
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..
Gene Class
Naked karyopsis
Allele
Nud (Hordeum)
nud (Hordeum)
Locus
CDO673
mn
nud
URL
http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=nud+(Hordeum)
Chromosome
7H
Image
Barley, Nud (hulled) phenotype
Barley, nud (naked) phenotype
BGS Photo
BGS7a, Naked caryopsis  [ BGS Database ]
Data Source
Franckowiak, Jerome D.96.10



Locus Associated with Gene
CDO673
Type
RFLP
Synonym
Synonymnud (Hordeum)
Chromosome
1H
7H
Chromosome Arm
7HS
Map
Barley-consensus-2003-1H117.8
[ Show all 17 ]
[ Show Nearby Loci ]
In QTL
QPg.PrNu-5H.1
Map Data
Barley consensus
[ Show all 16 ]
Probe
CDO673
Associated Gene
nud (Hordeum)
Homology
AC012188_16e-value: 2e-23(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
D81906e-value: 2.1probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491]
AC012188_16e-value: 2e-21(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Gene Class
Naked karyopsis
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO673 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
cdo673a
[ Show all 8 ]



Locus Associated with Gene
mn
Type
Gene
Synonym
Correct namen
Chromosome
7H
Map
Barley-Consensus2-7H78
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 7 ]
Species
Hordeum vulgare
Probe
Mapped_by_function
Associated Gene
nud (Hordeum)
Gene Class
Naked karyopsis
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L94 x Vada, Vada x SusPtrit, Oregon Wolfe Barleys, Cebada Capa x SusPtrit
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Vada x SusPtrit



Locus Associated with Gene
nud
Type
Gene
Synonym
Synonymnud (Hordeum)
Chromosome
7H
Map
Hordeum-Consensus2005-SNP-7H104.158
[ Show all 9 ]
[ Show Nearby Loci ]
Map Data
Barley genes 2
[ Show all 9 ]
Species
Hordeum vulgare
Associated Gene
nud (Hordeum)
Gene Class
Naked karyopsis
BGS Photo
BGS7a, Naked caryopsis  [ BGS Database ]
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
BGN 26 description:
http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=nud+(Hordeum)



Locus
nud (Hordeum)
Synonym
SynonymCDO673
nud