Query (optional)   in Class  

GrainGenes Marker Report: Ubi1

[ Printable Version ]  [ Submit comment/correction ]

Locus
Ubi1
Type
RFLP
Synonym
SynonympKG3730
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Consensus-7H19.4
[ Show all 15 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QDrm.StMo-7H
Map Data
[ Hide all but 1 of 15 ]
Barley consensus
Barley consensus 2
Barley, Abiotic QTL Consensus
Barley, Agronomic QTL Consensus
Barley, BinMap 2005
Barley, Consensus 2005, SNP
Barley, Consensus 2006, DArT
Barley, Consensus 2006, Marcel
Barley, Integrated, Marcel 2009
Barley, Steptoe x Morex, SNP
Barley, Steptoe x Morex, SSAP
Barley, Steptoe x Morex, SSR
Barley, SxM
Barley, SxM basemap
Barley, SxM, Feed QTLs
Probe
pKG3730
Candidate Gene
Ubi1 (Hordeum)
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of Ubi1 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
Ubi2
Ubi4
Ubi5



Probe for Locus
pKG3730
Locus
Ubi2
[ Show all 6 ]
Reference
ReferenceGausing K and Barkardottir R (1986) Structure and expression of ubiquitin genes in higher plants European Journal of Biochemistry 158:57-62.
Type
cDNA
Linkage Group
Barley 1 (7H)
Barley 7 (5H)
6
Source Gene Class
Polyubiquitin
Source Gene
Ubi1 (Hordeum)
Source Species
Hordeum vulgare
Insert Size
0.702
0.8
Clone Vector
pBR
Excision Enzyme
PstI
Clone Location
Kleinhofs, Andris
Clone Authority
Gausing, Kirsten
Data Source
Kleinhofs, Andris96.05.08
Information Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Gene Candidate for Locus
Ubi1 (Hordeum)
Gene Class
Polyubiquitin
Candidate Locus
Ubi1
Clone
pKG3730
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..