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GrainGenes Marker Report: X5SDna-H3

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Locus
X5SDna-H3
Type
RFLP
Map
Hordeum-Laurie1-2H98.9
Hordeum-Laurie2-2H106.8
[ Show Nearby Loci ]
Map Data
Barley, BxGP
Barley, CxHs
Probe
pTa794
Associated Gene
Rrn5S (Hordeum)
Gene Class
5S ribosomal RNA
Cytoplasmic ribosomal 5S RNA
Possible Orthologs
5SDna1
X5SDna
X5SDna1



Probe for Locus
pTa794
Locus
X5SDna
X5SDna1
X5SDna-1A
X5SDna-5A
X5SDna-H3
Reference
ReferenceGerlach WL and Dyer TA (1980) Sequence organization of the repeating units in the nucleus of wheat which contain 5S rRNA genes Nucleic Acids Research 8:4851-4865.
General Remarks
Part of the 120bp 5S RNA coding region and the non-transcribed spacer
Source Gene Class
Cytoplasmic ribosomal 5S RNA
Source Species
Triticum aestivum
Data Source
Dubcovsky, Jorge94.10.19
Laurie, David A.94.08



Gene Associated with Locus
Rrn5S (Hordeum)
Gene Class
5S ribosomal RNA
Cytoplasmic ribosomal 5S RNA
Locus
X5SDna-H3
Reference
ReferenceLeitch IJ and Heslop-Harrison JS (1993) Physical mapping of four sites of 5S rDNA sequences and one site of the alpha amylase-2 gene in barley Hordeum-vulgare. Genome 36:517-523.
ReferenceLaurie DA et al. (1993) The distribution of RFLP markers on chromosome 2(2H) of barley in relation to the physical and genetic location of 5S rDNA. Theoretical and Applied Genetics 87:177-183.
ReferenceKolchinsky A et al. (1990) 5S-RNA genes of barley are located on the second chromosome. Theoretical and Applied Genetics 80:333-336.
Chromosome
2H
Chromosome Arm
2HL
Comment
5S ribosomal RNA, shortest repeat.
The long repeat is on 3H.
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..