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GrainGenes Probe Report: AM38

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
AM38  [ Marker Report ]
Locus
AM38
Reference
ReferenceLi CD et al. (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars Theoretical and Applied Genetics 101:1259-1268.
General Remarks
Insert contains repeat (GAA)9
Among 20 oat cultivars, 3 alleles were found, polymorphic information content (PIC) = 0.56.
Type
PCR
SSR
Microsatellite
PCR primers
5'TGA TGA CCT CTT GAG TAA GCA
5'TGC CTT TCG TGG ACT TAC TA
SSR size
178
Amplification Conditions
Average melting temperature (degrees C) = 45
Source Species
Avena sativa
Source Germplasm
Ogle (oat)
Data Source
Scoles, Graham J.

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