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GrainGenes Probe Report: BE591423-5D

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
BE591423-5D
Data at Wheat_SNP
BE591423-5D
Reference
ReferenceAkhunov ED et al. (2010) Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics 11:702.
General Remarks
SNP G>T;A>T at 288;290
SNP DEL at 199-204
SNP A>T;T>C;T>A;T>G at 32;59;906;908
Reference sequence GCTTATATTTTAATGCTCCCTCTAATACATATTAATTGGCACTCACTTGGTACAACTTTAGTGCAAAGTTCTACTAAGTGAGCGACAATTAATATGGATCGGAGGGAGTAACATTTTAAAGTTCTTATTTTCATATTCACAGAGCTTTTGCCCTATGCTCTTATTGTGGAACAAAGTTCCTTCTGCATTTTCTTATTCTACAATTCACTTTCCTCCTTTTCTTGTTCTCTTTCTTTTTTGTTTGACGCTCATGTTTGTAATCTTACCCTCTAATCTTAAGTGAAAAGGCAGAGCACCTGCCTTTTGCCCGTAAAAAATCCTGTTTCTTTAGTCCTTTTTATTATTATAATGTGATATGCTAGTCCTTTTTGTTCTGTCAGTGATTTTGTCGATGCTAATTGTTGTATTTAAGCACTGCAGTCAATTCATGGGGCTGAAAAAGGGGAGACAGCTGCCATGTTACTTTCTCCAAGCTCCCGATCTTGCGCTGTAGGATTCAGTGGGGACTCTACACGGCAGAGTGGTAGTCAATTTACTATGTTCCTCACAGCTCCATTGCAAGCTTTCTGCTTTCTGATCGGCAATAATGGGCTGGACATTATTGACAAGGTTTGTGTTTTTATTTTGTGACAAATTTCTTATTTCTGCCAGGCACTACATTTTGCAGTCTGAGAATTGATATGATTTTTTTTCTGTAGGATTATAACAAAGCCGAGGAGCTACTATCCTTGTCATTGAATGAATGGGCCATGACTTTGGTTGCTTCGTCTTCACTT
Reference sequence TTTGGTGATGACAGTACATCAGCTATGCATTAAGGCAGGTTTGTTTACTCTCTTTTTTTTGCTGCCATATCTATTATTCTGGCTAGTGAATACTGAATATATATTCTTAGTGGAAGTGGAGTATCCATGATCGGTGGATGCTTCATATGGAATATTGTATTGCTTCCTTGAGATAATGCAGAGGTTATTATTGAGCCCGCTCATATGCACATAGACAAGCTTATATTTTAATGCTCCCTCTAATACATATTAATTGGCACTCACTTGGTACAACTTTAGTGCAAAGTTCTACTAAGTGAGCGACAATTAATATGGATCGGAGGGAGTAACATTTTAAAGTTCTTATTTTCATATTCACAGAGCTTTTGCCCTATGCTCTTATTGTGGAACAAAGTTCCTTCTGCATTTTCTTATTCTACAATTCACTTTCCTCCTTTTCTTGTTCTCTTTCTTTTTTGTTTGACGCTCATGTTTGTAATCTTACCCTCTAATCTTAAGTGAAAAGGCAGAGCACCTGCCTTTTGCCCGTAAAAAATCCTGTTTCTTTAGTCCTTTTTATTATTATAATGTGATATGCTAGTCCTTTTTGTTCTGTCAGTGATTTTGTCGATGCTAATTGTTGTATTTAAGCACTGCAGTCAATTCATGGGGCTGAAAAAGGGGAGACAGCTGCCATGTTACTTTCTCCAAGCTCCCGATCTTGCGCTGTAGGATTCAGTGGGGACTCTACACGGCAGAGTGGTAGTCAATTTACTATGTTCCTCACAGCTCCATTGCAAGCTTTCTGCTTTCTGATCGGCAATAATGGGCTGGACATTATTGACAAGGTTTGTGTTTTTATTTTGTGACAAATTTCTTATTTCTGCCAGGCACTACATTTTGCAGTCTGAGAATTGATATGATTTTTTTTCTGTAGGATTATAACAAAGCCGAGGAGCTACTATCCTGTCATGAATGAATGG
Type
EST
SNP
PCR primers
BE591423_cpR1 AACCCAGACAGGGTCAAGTG
BE591423D_F1 GATAATGCAGAGGTTATTGTTGA
Sequence
NSFT03P2_Contig13603
Linkage Group
5D
Source Species
Triticum aestivum
Data Source
You, Frank Mingan2010.01

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