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GrainGenes QTL Report: QSpd.SpanishDurum-5A

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QTL
QSpd.SpanishDurum-5A
Trait Affected
Spike density
Synonym
QTL0144_SD-Giraldo_et_al__2016
QTL0146_SD-Giraldo_et_al__2016
Ontology
TO:0000612http://browser.planteome.org/amigo/term/TO:0000612seed density
CO_321:0000055http://browser.planteome.org/amigo/term/CO_321:0000055wheat spike density trait
Trait Study
Agromorphology and grain quality, Spanish tetraploid landraces, Giraldo2016
Chromosome
5A
Positive Significant Marker
IWB35865
[ Show all 7 ]
LOD Peak Location
wPt-4248
wPt-6825
wPt-9094
Species
Triticum turgidum ssp. durum
Triticum turgidum ssp. turgidum
Triticum turgidum ssp. dicoccon
Comment
type of mapping = GWAS-QTL
Curator Note (VCB, 04/2019). QTL names and markers associated with this QTL are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate this QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
Reference
ReferenceGiraldo P et al. (2016) Genetic Diversity and Association Mapping for Agromorphological and Grain Quality Traits of a Structured Collection of Durum Wheat Landraces Including subsp. durum, turgidum and diccocon PLoS One 11:e016657.