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GrainGenes QTL Report: QUt.spa-3A.2

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QTL
QUt.spa-3A.2
Trait Affected
Reaction to smut
Synonym
QTL1474_3A-Kumar_et_al._2018
Ontology
CO_321:0000921Planteomewheat loose smut incidence trait
Trait Study
Smut resistance, Blackbird x Strongfield, Kumar2018
Chromosome
3A
Positive Significant Marker
IWB72172
IWA5015-3A
Kukri_c10751_264
JG_c2645_107
LOD Peak Location
Kukri_c10751_264
JG_c2645_107
Phenotypic R2
21.2
Species
Triticum turgidum ssp. durum
Triticum turgidum ssp. carthlicum
Parent
Blackbird
Strongfield
Comment
Curator Note (3/2019)The name 'spa' was from the paper's QTL name; but without definition of its origen. There was no QUt.spa-3A.1, but the 3A.2 version was used to maintain consistency with the original publication.
Curator Note (VCB, 04/2019). QTL names and markers associated with this QTL are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate this QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
Reference
ReferenceKumar S et al. (2017) High-density genetic mapping of a major QTL for resistance to multiple races of loose smut in a tetraploid wheat cross PLoS One 13:e019226.

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