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GrainGenes QTL Report: QYI.Col-1B.1

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QTL
QYI.Col-1B.1
Trait Affected
Grain yellow index
Synonym
QTL0052_SY-Colasuonno_et_al__2017
Ontology
CO_321:0000400PlanteomeMinolta Chroma Meter Test
CO_321:0000674Planteomewheat semolina yellow pigment content trait
Trait Study
Grain yellow index, AABB Collection, Valenzano2012
Semolina Yellow Traits, AABB Collection, Colasuonno2017
Map
Wheat_AB_2017_Carotenoid_QTL-1B
Map Data
Wheat AB, Carotenoid QTL, 2017
Chromosome
1B
Nearest Marker
IWB73278
Positive Significant Marker
barc128-1B
IWB72106
IWB73278
LOD Peak Location
IWB73278
Species
Tritidum turgidum L.
Comment
QTL measured on the entire tetraploid T.turgidum collection
Trait Studies are those where the SNP marker was significantly associated (-log10(p)>=3) with yellow index identified by GWAS (model MLM + K + PCs)
type of mapping = GWAS QTL
Curator Note (VCB, 04/2019). QTL names and markers associated with this QTL are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate this QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
Reference
ReferenceColasuonno P et al. (2017) The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments BMC Genomics 18:122.