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GrainGenes Reference Report: FPS-8:774

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Reference
FPS-8:774
Title
Novel Sources of Stripe Rust Resistance Identified by Genome-Wide Association Mapping in Ethiopian Durum Wheat (Triticum turgidum ssp. durum)
Journal
Frontiers in Plant Science
Year
2017
Volume
8:774
Author
Liu W
[ Show all 8 ]
Abstract
Stripe rust of wheat, caused by Puccinia striiformis f. sp. tritici (Pst), is a global concern for wheat production, and has been increasingly destructive in Ethiopia, as well as in the United States and in many other countries. As Ethiopia has a long history of stripe rust epidemics, its native wheat germplasm harbors potentially valuable resistance loci. Moreover, the Ethiopian germplasm has been historically underutilized in breeding of modern wheat worldwide and thus the resistance alleles from the Ethiopian germplasm represent potentially novel sources. The objective of this study was to identify loci conferring resistance to predominant Pst races in Ethiopia and the United States. Using a high-density 90 K wheat single nucleotide polymorphism array, a genome-wide association analysis (GWAS) was conducted on 182 durum wheat landrace accessions and contemporary varieties originating from Ethiopia. Landraces were detected to be more resistant at the seedling stage while cultivars were more resistant at the adult-plant stages. GWAS identified 68 loci associated with seedling resistance to one or more races. Six loci on chromosome arms 1AS, 1BS, 3AS, 4BL, and 5BL were associated with resistance against at least two races at the seedling stage, and five loci were previously undocumented. GWAS analysis of field resistance reactions identified 12 loci associated with resistance on chromosomes 1A, 1B, 2BS, 3BL, 4AL, 4B and 5AL, which were detected in at least two of six field screening nurseries at the adult-plant stage. Comparison with previously mapped resistance loci indicates that six of the 12 resistance loci are newly documented. This study reports effective sources of resistance to contemporary races in Ethiopia and the United States and reveals that Ethiopian durum wheat landraces are abundant in novel Pst resistance loci that may be transferred into adapted cultivars to provide resistance against Pst.
External Databases
https://doi.org/10.3389/fpls.2017.00774
Germplasm
[ Hide all but 1 of 181 ]
WC-1no.4
WC-1no.59
WC-4no.2
DW-K-Ino.96
DW-K-Ino.131
DW-B1no.98
Gojam-23no.39
Gojam-24no.23
Gojam-24no.33
Tigray-8no.7
Tigray-8no.13
Tigray-8no.1
Shoa-28no.15
Shoa-28no.22
WC-2no.12
WC-2no.47
WC-2no.100
WC-4no.78
WC-9no.104
DW-K-Ino.39
DW-K-Ino.42
DW-K-Ino.52
DW-K-Ino.63
DW-K-Ino.67
DW-K-Ino.128
DW-K2no.40
DW-K2no.47
Gojam-23no.3
Selam
2000/01population69-47FRno.75
2000/01population69-47FRno.83
2000/01population69-47FRno.93
2000/01population69-47FRno.95
2000/01population69-47FRno.99
2000/01population69-47FRno.101
2000/01population69-47FRno.102
2000/01population69-47FRno.103
2000/01populationFRno.11
2000/01populationFRno.16
2000/01populationFRno.29
2000/01populationFRno.30
2000/01populationFRno.40
2000/01populationFRno.43
2000/01populationFRno.45
2000/01populationFRno.85
2000/01populationFRno.87
2000/01populationFRno.88
2000/01population75-51FRno.92
2000/01population75-51FRno.15
2000/01population75-51FRno.23
2000/01population75-51FRno.41
2000/01population75-51FRno.51
2000/01population75-51FRno.57
2000/01population90FRno.59
2000/01population37-30BDIno.10
2000/01population37-30BDIno.12
2000/01population37-30BDIno.20
2000/01population37-30BDIno.26
2000/01population37-30BDIno.48
2000/01population37-30BDIno.63
2000/01population37-30BDIno.105
2000/01population14no.3
2000/01population14no.5
2000/01population14no.13
2000/01population14no.36
2000/01population14no.45
2000/01population14no.55
2000/01population14no.60
2000/01population25-23BDIno.105
2000/02population82no.4
WC-2no.85
WC-10no.75
DW-K-Ino.136
DW-A-Ino.71
DW-A-Ino.80
DW-A-Ino.130
DW-A-4no.17
DW-A-4no.36
DW-B-3no.28
DW-A-3no.73
CD-no.32
CD-1no.65
CD-1no.89
DW-B1no.34
WC-1no.109
WC-2no.1
WC-2no.41
WC-2no.58
WC-2no.80
WC-4no.85
WC-4no.101
WC-5no.99
WC-6no.50
WC-8no.57
WC-12no.28
WC-12no.36
WC-12no.40
WC-12no.53
WC-12no.70
WC-14no.29
WC-14no.53
WC-14no.61
WC-14no.72
WC-15no.105
WC-16no.57
WC-16no.88
DW-A-Ino.27
DW-A-Ino.33
DW-A-Ino.48
DW-A-Ino.52
DW-A-Ino.57
DW-A-Ino.94
DW-A-Ino.1
DW-A-Ino.19
DW-A-Ino.50
DW-B-3no.22
DW-B-3no.24
DW-B-3no.30
DW-B-3no.32
DW-A-3no.38
DW-A-3no.40
DW-A-3no.50
DW-A-3no.58
DW-A-3no.60
CD-1no.10
CD-1no.14
CD-1no.25
CD-1no.36
CD-1no.39
CD-1no.55
CD-1no.58
CD-1no.79
2000/01population37-30BDIno.36
2000/01population37-30BDIno.55
2000/01population14no.10
2000/01population14no.106
2000/01population25-23BDIno.1
2000/01population25-23BDIno.18
2000/01population25-23BDIno.22
2000/01population25-23BDIno.24
2000/01population25-23BDIno.27
2000/01population25-23BDIno.29
2000/01population25-23BDIno.35
2000/01population25-23BDIno.42
2000/01population25-23BDIno.45
2000/01population25-23BDIno.48
2000/01population25-23BDIno.50
2000/01population25-23BDIno.57
2000/01population25-23BDIno.60
2000/01population25-23BDIno.64
2000/01population25-23BDIno.68
2000/01population25-23BDIno.72
2000/01population25-23BDIno.80
2000/01population25-23BDIno.83
2000/01population25-23BDIno.90
2000/01population25-23BDIno.93
DW-A-Ino.21
Gojam-24no.31
Megenagna
Werer
Mettaya
Ejersa
Flakit
Ude
Malefia
Mossobo
Ginchi
Toltu
Yerer
Obsa
Bichena
Leliso
Denbi
Tate
Hitosa
Bakalcha
Kilinto
Kokate
Ilani
2000/01population37-30BDIno.51
2000/01population14no.94
QTL
QYr.EthDurum-1A.1
[ Show all 160 ]
Trait Study
Stripe rust resistance, Ethiopian durums, Liu2017d

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