Query (optional)   in Class  

GrainGenes Reference Report: TAG-128-1083

[Submit comment/correction]

Reference
TAG-128-1083
Title
Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.)
Journal
Theoretical and Applied Genetics
Year
2015
Volume
128
Pages
1083-1101
Author
Naruoka Y
Garland-Campbell KA
Carter AH
Abstract
Stripe rust (Puccinia striiformis F. sp. tritici; also known as yellow rust) is a globally devastating disease of wheat (Triticum aestivum L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to Yr17 and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars.
External Databases
https://doi.org/10.1007/s00122-015-2492-2
Germplasm
[ Hide all but 1 of 402 ]
5J030648-4
5J030662-13
5J030662-4
5J030731-2
5J030750-1
5J040024-1
5J040024-2
5J040039-1
5J040048-1
5J040094-1
5J040094-2
5J040150-1
5J040612
5J040736
5J040746
5J040847
5J040852
5J040879
5J040924
5J040928
5J040965
5J041120
6J030184-2
98X371-3C
98X402-1C
98X471-2C
98X472-4C
98X525-3C
98X551-1C
99X13-3C
99X15-1C
99X60-2C
AGS 2000
AP 700 CL
AP Legacy
ARS14142
ARS15144
ARS960277L
ARS970042-1C
ARS970071-3C
ARS970075-3C
ARS970161-3L
ARS970163-4C
ARS970170-2L
ARS970184-1C
ARS97230-6C
ARS980495-2L
ARS98356-2C
B980696
BAUERMEISTER
Bitterroot
Boundary
BREVOR
BRUEHL
BRUNDAGE 96
BRUNEAU
BUCHANAN
CARA
CASHUP
CDC Kestrel
Centurk78
Chukar
CODA
CodaxBrundage RIL entry 13
CodaxBrundage RIL entry 20
CodaxBrundage RIL entry 27
CodaxBrundage RIL entry 39
CodaxBrundage RIL entry 4
CodaxBrundage RIL entry 46
CodaxBrundage RIL entry 55
CodaxBrundage RIL entry 63
CodaxBrundage RIL entry 77
CodaxBrundage RIL entry 95
DAWS
DUP1Tres
EDDY
Edwin
Elgin SJ
Eltan
ESTICA
Farnum
FIDEL
Finch
FinchxEltan RIL entry 10
FinchxEltan RIL entry 100
FinchxEltan RIL entry 111
FinchxEltan RIL entry 112
FinchxEltan RIL entry 127
FinchxEltan RIL entry 143
FinchxEltan RIL entry 151
FinchxEltan RIL entry 167
FinchxEltan RIL entry 23
FinchxEltan RIL entry 3
FinchxEltan RIL entry 37
FinchxEltan RIL entry 39
FinchxEltan RIL entry 4
FinchxEltan RIL entry 42
FinchxEltan RIL entry 50
FinchxEltan RIL entry 62
FinchxEltan RIL entry 77
FinchxEltan RIL entry 87
FinchxEltan RIL entry 98
FINLEY
Foote
GAINES
GARLAND
Gene
GEORGE
Goetze
GOLDEN SPIKE
HATTON
HILL 81
Hiller
HS00120
HS00125
HS00131
HS00135
HS00146
HS00162-12L-2
HS00162-17L-5
HS00162-1L-5
HS00162-20L-4
HS00162-21L-6
HS00162-23L-4
HS00162-6L-4
HS00163-4L-1
HS00165
HS00166
HS00167
HS00168
HS00169
HS00170
HS00171
HS00172
HS00173
HS00176
HS00177
HS00179
HS00181
HS00182
HS00183
HS980165-1L
HS98139-2L-2
HS98152-2L-2
HS98175-3L-2
Hubbard
HYAK
ID00-10701A
ID00-475-2DH
ID01-11205A
ID01-11604A
ID01-11803A
ID01-19904A
ID01-30105A
ID01-49201B
ID0663
ID96-16702A
ID98-15306A
ID98-19010A
ID98-19502A
ID99-06202A
ID99-22501A
Jagger
Karl
KKHR05001-0-0-0-112
KKHR05001-0-0-0-27
KKHR05001-0-0-0-45
KKHR05001-0-0-0-62
KKHR05001-0-0-0-63
KKHR05001-0-0-0-66
KKHR05001-0-0-0-91
KKHR05001-0-0-0-95
Lambert
LEGION
LEWJAIN
LUKE
MADSEN
MASAMI
MDM
NORSTAR
NORWEST553
NUGAINES
OMAR
OR2030411
OR2040726
OR2050905
OR2050910
OR2052046H
OR2060395
OR2060541
OR2060835
OR2070011
OR2070349
OR2070385
OR2070453
OR2070608
OR2070870
OR2070923
OR2071029
OR2071071
OR2071543
OR2071628
OR2071681
OR2071695
OR2071725
OR9800924
OR9900553
OR9901619
ORCF-101
ORCF-101R
ORCF-102
ORCF-103
ORFW5
ORSS-1757
PAHA
Paladin
R JAMES
RCL1
RCL10
RCL2
RCL3
RCL4
RCL5
RCL6
RCL7
RCL8
RCL9
ROD
Salute
SEL101
SIMON
SSD060015
SSD060040
SSD060043
SSD060061
SSD060100
SSD060140
SSD060147
SSD060156
SSD060204
SSD060252
SSD060256
SSD060295
SSD060298
SSD060316
SSD060387
SSD060414
SSD060426
SSD060433
SSD060435
SSD060443
SSD060493
SSD060499
SSD060530
SSD060535
SSD060537
SSD060546
SSD060550
SSD060683
SSD060702
SSD060763
STEPHENS
Tiber
TRES
Tubbs
TYEE
UI DARWIN
UI GRACE
UI SILVER
VW-16
VW-18
VW-23
VW-51
WA 7811 SJ
WA 7917 SJ
WA 7965 SJ
WA007970
WA007971
WA008022
WA008063
WA008064
WA008065
WA008066
WA008068
WA008070
WA008092
WA008093
WA008094
WA008095
WA008096
WA008097
WA008116
WA008117
WA008118
WA008119
WA008120
WA008121
WB 1020M
WB 1066M
WB 1070M
WB 456
WB 523
WB 528
Weatherford
Whetstone
X000175-18-2
X00219-5C
X00223-2C
X00248-1C
X00254-4C
X00262-1C
X00270-6L
X00277-1L
X00289-2L
X00290-4L
X00295-12C
X00303-1C
X010701-1C
X010702-2L
X010703-2L
X010704-1L
X010705-2C
X010706-3L
X010708-2L
X010710-5L
X010712-1L
X010713-1L
X010715-2C
X010719-1L
X010720-1L
X010721-1L
X010723-2L
X010724-1L
X010725-1L
X010726-1L
X010727-1L
X010728-1L
X010729-1L
X010730-1L
X010731-1L
X010732-1C
X010733-3L
X010734-1L
X010736-1L
X010738-4L
X010741-1C
X010742-1C
X010743-1C
X010744-3C
X010745-2C
X010746-1C
X010747-1C
X010749-1C
X010750-1C
X010754-6C
X010761-5C
X010762-2C
X010765-1C
X010766-1C
X010767-2C
X010768-4C
X010769-3C
X010774-2C
X010779-3C
X010780-1L
X010781-1L
X010782-3C
X010783-2C
X010787-1C
X010790-2C
X010795-1L
X010799-2L
X010802-3L
X010807-2L
X010809-1C
X010811-1C
X010812-1L
X010814-1L
X010815-1L
X010816-1L
X010817-2L
X010819-1C
X010820-2C
X010822-3L
X010824-4C
X010826-6L
X010829-2L
X010830-2C
X970161-2L
X970167-1-L
X980336-5L
X980421-1C
X980434-1L
X980437-3L
X980451-4C
X990070-C
X990072-2C
X990077-1C
X990085-1C
X990121-1C
X99341-2C
XERPHA
Map Data
Wheat, Yr Update, 2021
QTL
Qyr.wpg-1B.1
[ Show all 44 ]

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.