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GrainGenes Reference Report: GNM-43-94

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Reference
GNM-43-94
Title
Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations
Journal
Genome
Year
2000
Pages
94-101
Author
Jin H
Domier LL
Shen X
Kolb FL
Abstract
Summary: A combined RFLP and AFLP map was constructed for hexaploid oat (Avena spp.). The segregation of AFLP markers was scored in two hexaploid oat recombinant inbred line (RIL) populations, the 'Kanota' x 'Ogle' RFLP population, and a population derived from 'Clintland64' and 'IL86-5698', barley yellow dwarf virus (BYDV)-sensitive and BYDV-tolerant lines, respectively. More than 300 AFLP markers were scored in each population, of which 97 could be scored in both populations. AFLP markers were linked to RFLP markers in 32 of 36 'Kanota' x 'Ogle' RFLP linkage groups. The addition of the AFLP markers to the 'Kanota' x 'Ogle' RFLP data set combined markers from four pairs of linkage groups and increased the size of the map from 1402 cM to 2351 cM. Thirty linkage groups were observed in the 'Clintland64' x 'IL86-5698' population, two of which could be consolidated by comparing the maps from both populations. The AFLP and RFLP markers showed very similar distributions in the 'Kanota' x 'Ogle' population with a tendency of each type of marker to cluster with markers of the same type. The placement of a set of AFLP markers on the 'Kanota' x 'Ogle' linkage map will enrich the RFLP map and allow others to relate AFLP markers for agronomically important genes to the reference 'Kanota' x 'Ogle' linkage map
Locus
[ Hide all but 1 of 632 ]
Xcdo580
Xisu1774
Xcdo395a
E1M3-3a
E3M5-11b
E1M6-9a
Xcdo1380
e6m4-1c
e6m6-8
e1m2-2
e1m3-6an
e5m7-4
e5m7-8
e9m5-4
e9m5-3
e6m6-9
e2m3-1
e4m7-4
e2m2-1b
e9m6-2
e4m2-1a
e5m5-9
e6m5-3aA
e3m5-3
e1m6-14a
e6m4-4a
e4m8-5
e9m5-10b
e6m6-18a
e8m3-1
e6m4-5
e2m2-6
e3m5-6a
e3m5-13
e4m2-5
e5m5-11
e8m3-5n
e3m7-4
e2m2-1f
e5m5-7
e3m3-13
e9m5-11
e3m5-7
e8m8-9
e2m2-1d
e5m5-8
e6m6-19
e1m6-1
e1m3-8
e8m8-5
e1m6-9
e6m6-12
e6m6-5
e4m8-3
e4m8-2
e4m8-1
e1m6-15
e1m8-4
e3m5-6
e5m1-13n
e4m2-2
e1m6-8
e3m5-11A
e1m8-4a
e8m3-9
e5m7-10
e2m2-1g
e8m3-4
e6m4-3a
e8m1-6
e6m5-11
e9m5-7b
e3m7-1a
e1m6-13
e5m1-1
e7m2-7a
e9m5-6
e6m6-13
e1m3-4
e8m3-14
e3m3-11
e6m5-7
e9m6-1a
e5m5-10
e6m6-7
e4m7-1a
e6m6-14a
e1m3-10
e4m6-1a
e9m5-7
e9m5-15
e1m8-2
e5m5-3
e1m3-11
e9m6-4
e1m8-8
e6m4-2
e6m4-1a
e1m6-2
e6m5-5a
e7m2-6
e1m6-15a
e1m3-5
e6m6-3n
e6m6-2n
e5m1-11n
e5m1-2n
e4m6-9n
e4m6-8
e1m3-6
e5m7-9n
e2m3-4n
e1m8-7
e1m3-7
e3m5-5
e1m6-6
e2m2-1e
e4m2-1c
e6m6-4a
e7m2-7
e6m6-11
e4m7-3
e1m3-4a
e3m7-6
e3m7-2
e2m3-12
e2m2-5
e1m3-9
e8m3-3
e4m8-4
e6m5-2
e6m6-6n
e2m2-5a
e6m5-5
e8m3-7
e8m3-2
e4m2-1e
e4m7-2
e1m8-6
e4m6-6a
e5m1-7
e6m4-3b
e6m4-7
e8m1-8
e1m3-12n
e8m1-4
e1m8-3n
e1m2-3b
e2m3-10
e9m5-10
e1m6-3
e8m1-3
e9m5-8
e3m3-12
e5m7-5
e5m7-6
e6m5-8n
e1m3-14
e2m3-8aA
e8m3-10
e6m5-1a
e6m4-3
e2m3-2n
e9m6-1n
e6m6-20n
e6m5-10n
e8m8-2n
e9m5-5n
e9m5-9n
e4m2-1fn
e1m6-5n
e8m3-13
e8m1-9n
e3m7-3n
e6m4-2an
e1m6-10n
e6m6-1n
e5m5-10an
e9m5-2n
e3m3-10
e1m6-7
e3m7-7
e9m5-16
e8m3-1n
e8m8-4n
e4m6-1
e2m2-3
e7m2-3
e2m3-12a
e1m8-1a
e2m3-5
e3m3-15
e9m5-12
e1m3-3
e2m2-7
e1m6-11
e9m6-3a
e2m3-8aB
e1m6-14
e3m7-5
e7m2-5
e2m2-4
e8m8-8
e9m5-1
e2m2-8
e8m8-6
e2m2-15
e2m3-8C
e2m3-2a
e2m3-3
e2m2-12
e2m2-11
e4m6-7
e6m5-1n
e4m6-3
e9m5-2b
e5m5-4
e5m5-1
e6m5-9
e3m3-16
e3m5-8
e5m1-9n
e3m7-1
e2m3-6n
e3m5-4n
e4m2-1b
e2m3-5a
e4m7-1
e2m3-7
e1m6-16n
e8m3-6n
e9m5-13
e6m6-10n
e6m6-4n
e7m2-7c
e6m4-6n
e6m6-17
e9m5-14a
e8m3-16
e3m7-7a
e2m3-9
e8m8-3
e8m8-1
e6m4-4
e7m2-2
e5m5-6
e5m7-11
e3m5-9
e6m4-2b
e1m3-1
e3m3-17
e9m5-2a
e6m5-3aB
e4m2-2a
e8m3-17n
e1m8-5
e5m5-5
e3m5-1
e4m2-4
e8m1-1
e4m8-1a
e7m2-4
e1m3-2
e5m1-6n
e8m1-13
e8m1-7n
e6m5-7a
e6m5-6n
e8m3-15
e1m3-13a
Xbcd342A
Xcdo1466
Xbcd1851C
e2m5-12
e5m5-16
Xumn388
Xbcd1882C
e6m4-20
e6m5-4
Xcdo1342
Xcdo539B
e1m2-8
Xbcd1779
e4m6-1b
Xumn433
Xbcd1405
Xwg719B
Xbcd454
Xcdo590B
e1m2-3
e6m4-9
Xwg110B
Xbcd115A
e3m7-11
Xcdo278
Xwg110C
Xcdo1319A
Xcdo1510
Xbcd1660
e1m3-19
Xcdo1403A
Xbcd1823A
e5m7-3a
e5m7-14
Avn-A
Xumn214A
Xumn101
Xumn341A
Xcdo309A
e3m7-1c
Xcdo718B
e4m2-7
Xcdo618A
Xcdo220
e5m5-26
Xumn214B
Xcdo1242
e1m6-3n
e6m5-16
e6m6-6
Xumn106
Xbcd1580
Xbcd1897A
e2m3-8D
e4m5-11
Xcdo1358
Xcdo1081
Xcdo1433
Xisu2192A
Xbcd1280A
e6m5-7b
Xbcd1049
e8m3-1d
e5m5-14
e4m2-8
e2m2-14
Xcdo673A
Xcdo1445B
Xcdo304
e5m5-10b
e8m3-1b
e4m6-17
e6m5-1
e5m7-13
e3m7-9
e3m7-26
Px
e3m7-15
Xptb17
Xumn109
e5m3-8
Xwg645
Xumn407
e8m8-10
Xwg605
e6m5-13
Xumn5047
e3m7-8A
e2m2-16
e2m2-17
e6m4-23
e1m2-9A
Xcdo370
e2m5-1
Xcdo1319B
e1m3-15
e1m3-26
Xcdo1396
e2m2-13A
Xcdo405
Xbcd1307
Xcdo780
Xbcd1160
e6m6-1
e1m3-24
e1m3-18
e1m6-10
Xbcd1950B
Xumn826
Xcdo1407B
e1m3-17A
Xcdo1414B
e5m3-4
e4m2-6
e6m4-16
e3m7-24
Xcdo1199A
e6m4-17
Xcdo595
e1m2-4
e5m5-1a
Xisu1146A
Xcdo1378B
Xumn361
Xbcd1872B
e5m7-3
Xcdo1313
Xumn815B
Xcdo1419
Xcdo82
e5m5-12A
Xcdo708A
e3m7-13
Xumn420
Xumn162
e1m3-28
e3m7-8B
Xisu1450
e8m1-5
Xcdo1328
Xbcd1950A
Xcdo1388
Xbcd1856
Xumn409
e1m2-9B
e4m6-9
e1m5-22
e2m2-13B
Xbcd1270
Xisu2287
e6m4-1d
Xcdo1281
Xcdo1436C
Xcdo1464
e2m5-6A
Xcdo187A
Xcdo480
Xpta71A
Xcdo1174A
e2m5-1aA
Xbcd1532B
Xcdo1435B
Xcdo480A
Xumn706B
e8m1-2
Xumn133B
Xumn107B
Xcdo638
e5m5-18
e5m5-17A
Xbcd1876
Xcdo585B
Xog49
e5m3-5a
e3m7-1d
Xcdo57D
e1m2-7
Xcdo1192B
Xumn339A
Xwg719A
Xbcd1184
Xcdo1495
Xcdo1430
Xcdo1509A
Xcdo665A
e4m6-2
Xcdo1092
Xbcd1117
Xumn13
Xbcd1265
Xbcd1695
Xwg466
Xcdo1509C
e1m3-27
e6m4-22
e2m2-23a
e2m5-5
e2m2-23b
e2m5-10
Xbcd1250
e5m3-7
Xumn441B
Xcdo1407A
e1m6-18
e4m8-10
e1m3-17B
e2m2-6e
e4m2-11
e4m6-13
Xumn128
Xcdo54
Xbcd127
e2m5-2
e5m3-2a
Xbcd1380A
e6m6-2A
e1m6-20
Xcdo1435C
e8m3-11
Xcdo460B
Xcdo1403B
Xcdo1345
Xacor221
e2m5-7
e5m7-7A
e6m6-3
e4m8-12
e5m5-12B
Xcdo1238
Xisu1755B
Xcdo1340
Xcdo962A
e2m5-8a
e2m2-9
e1m3-16
e1m3-14a
Xcdo1378A
Xcdo1467A
e1m2-3a
e1m2-6
e8m3-17
e2m5-6B
e3m7-20
e4m6-4
e4m2-11a
Xisu1736
Xcdo414
Xisu1254B
Xisu1900A
Xisu2013
Xbcd421A
Xcdo1090C
e5m5-15
Xbcd1716B
Xumn364A
Xisu1543A
Xbcd1931
Xbcd1860
Xcdo1428A
e3m7-1b
e8m3-12
e6m5-10
e1m3-12
e5m5-21
e3m7-19
e6m5-4a
Xcdo1402A
Xisu582A
Xcdo58B
e6m4-25a
Xksu-A1
e6m5-18
Xbcd1872A
e6m4-18
Xcdo942
e3m7-22a
e2m5-9
Xumn287
Xumn856A
Xbcd327
Xcdo1196
Xcdo608A
e8m3-19
Xumn114
Xcdo542
e6m6-2B
Xcdo1471
Xcdo708B
Xbcd1797A
Xbcd1968C
Xbcd1734
Xcdo1437B
Xcdo484A
Xisu1163
Xcdo770B
e5m7-7B
Xcdo1523B
Xumn5004
Xisu2124A
Xbcd1235
Xcdo412A
skdh
Xumn207A
Xbcd1871
e6m4-27
e5m3-1
e5m5-17B
Xbcd1338A
Xcdo57A
e6m6-2c
e4m2-9
e4m2-12
Xcdo348B
Xcdo122
Xbcd808A
Xbcd1797C
Xisu1961
e5m7-15
Xcdo457A
Xbcd1186
e3m7-18
Xumn856B
Xcdo58A
e8m3-12n
e1m3-13b
Xbcd1968B
Xcdo1168A
Xcdo1523A
Xcdo590A
e2m2-21
Xcdo795A
Xumn363A
Xbcd897
Xcdo373
Xbcd961
Xisu563B
e4m2-1
e1m6-17
Xcdo187B
Xcdo480B
Xpta71C
Xcdo1174B
e2m5-1aB
Xumn41
Xbcd1555
Xisu1463
Xisu1874A
e6m4-2a
e1m2-1a
e6m5-8
Xbcd1407
Xbcd1716A
Xumn23
Xcdo1321A
e5m3-3
Xbcd1882B
e5m5-3a
Xumn498A
e1m6-23
Xumn498B
Avn-B
Avn-C
Map Data
Oat, CxI
Oat, KxO, AFLP
Keyword
avena
[ Show all 16 ]
Image
Oat CxI 1-15
Oat CxI 16-30
Oat KxO-AFLP maps I
Oat KxO-AFLP maps II

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