Query (optional)   in Class  

GrainGenes Reference Report: FGN-12:684702

[Submit comment/correction]

Reference
FGN-12:684702
Title
Development and Exploitation of KASP Assays for Genes Underpinning Drought Tolerance Among Wheat Cultivars From Pakistan.
Journal
Frontiers in Genetics
Year
2021
Volume
12
Author
[ Hide all but 1 of 11 ]
Ur Rehman S
Ali Sher M
Saddique MAB
Ali Z
Khan MA
Mao X
Irshad A
Sajjad M
Ikram RM
Naeem M
Jing R
Abstract
High-throughput genotyping for functional markers offers an excellent opportunity to effectively practice marker-assisted selection (MAS) while breeding cultivars. We developed kompetitive allele-specific PCR (KASP) assays for genes conferring drought tolerance in common wheat (Triticum aestivum L.). In total, 11 KASP assays developed in this study and five already reported assays were used for their application in wheat breeding. We investigated alleles at 16 loci associated with drought tolerance among 153 Pakistani hexaploid wheat cultivars released during 1953–2016; 28 diploid wheat accessions (16 for AA and 12 for BB) and 19 tetraploid wheat (AABB) were used to study the evolutionary history of the studied genes. Superior allelic variations of the studied genes were significantly associated with higher grain yield. Favored haplotypes of TaSnRK2.3-1A, TaSnRK2.3-1B, TaSnRK2.9-5A, TaSAP-7B, and TaLTPs-1A predominated in Pakistani wheat germplasm indicating unconscious pyramiding and selection pressure on favorable haplotypes during selection breeding. TaSnRK2.8-5A, TaDreb-B1, 1-feh w3, TaPPH-7A, TaMOC-7A, and TaPARG-2A had moderate to low frequencies of favorable haplotype among Pakistani wheat germplasm pointing toward introgression of favorable haplotypes by deploying functional markers in marker-assisted breeding. The KASP assays were compared with gel-based markers for reliability and phenotypically validated among 62 Pakistani wheat cultivars. Association analyses showed that the favorable allelic variations were significantly associated with grain yield-contributing traits. The developed molecular marker toolkit of the genes can be instrumental for the wheat breeding in Pakistan.
External Databases
https://doi.org/10.3389/fgene.2021.684702
Locus
TaSnRK2.3-1A
[ Show all 11 ]
Probe
TaSnRK2.3-1A-KASP-1
[ Show all 16 ]

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.