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GrainGenes Sequence Report: BE426257

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Sequence
BE426257
Contig
Ta.2200.1.S1_at
NSFT03P2_Contig18265
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC287762
wEST map position
BE426257
NCBI UniGene
Ta.2200
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001054668.1 Os05g0150800 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1AS
1BS
1DS
Clone Library
Wheat unstressed seedling shoot cDNA library
Tissue
Etiolated shoot
Developmental Stage
Five day old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0330_H05_O10ZS Wheat unstressed seedling shoot cDNA library Triticum aestivum cDNA clone WHE0330_H05_O10, mRNA sequence.
Other Name
WHE0330_H05_O10ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA006E1X
Clone
WHE0330_H05_O10
Probe
WHE0330_H05_O10
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Shoots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Shoots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.2200.1.S1_at983WHE2AFFY
Ta.2200.1.S1_at628WHE2AFFY
DNA
tccaccgcctcaacgccgaccccgccgtccacggaattcttgttcagctt
ccattgcccaagcatatcaacgaagaaaatatcttaaaccagatctccat
tgagaaagatgtcgacggctttcatcctttgaacattggcaagctcgcaa
tgaaaggcagagatccactgttcgtaccttgcacgccaaagggatgcatg
gagctcctgtcacgaagtggcgtcactgtaaaaggaaaacacgcagttgt
ggttgggcgtagcaacatcgtgggtttaccagtatcccttctcctgctga
aagcggacgcgaccgtgtcgatcgtgcattcacggaccccaaatcccgaa
acaattgtccgtcaagcagacattgtcattgcagcagctggccaggccat
gatgatcaagggagactggatcaaaccaggcgcggcggtcatagacgtcg
ggacaaactccatcgacgacccaaccaggaagtctgggtacagactcgtt
ggcgatgtggatttctc

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