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GrainGenes Sequence Report: BE495028

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Sequence
BE495028
Contig
NSFT03P2_Contig16649
Tracefile
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External Databases
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wEST map position
BE495028
DB Remark
Locus Source: Secale cereale (rye)
Keyword
EST
Germplasm
Blanco
Species
Secale cereale
Cultivar
Blanco
Chromosome
1AL
1BL
1DL
3DL
Clone Library
Secale cereale anther cDNA library
Tissue
Anther
Developmental Stage
Adult plant before anthesis
Data Source
genbankRelease 135, Apr 15 2003
genbankDownloaded 2008-2009
Title
WHE1267_F06_K11ZS Secale cereale anther cDNA library Secale cereale cDNA clone WHE1267_F06_K11, mRNA sequence.
Other Name
WHE1267_F06_K11ZS  [ wEST-ACEDB ]  [ wEST-mySQL ]
Strain
lab_host E. coli SOLR
DNA Library
SC024E1X
Clone
WHE1267_F06_K11
Probe
WHE1267_F06_K11
Remark
DB_xref: taxon:4550
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Anthers were harvested and pooled from early meiosis to late meiosis. The tissue, total RNA, and poly(A) RNA were prepared (Butler, Ross and Gustafson) at University of Missouri, Columbia. A cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.1018.2.S1_x_at789WHE2AFFY
[ Show all 37 ]
DNA
cgcgccccgtttattcccctccgcgcagccgcccccgtgtctcgtgcgca
cctcctccctcacccccatggcggaccagctcaccgacgagcagatcgcc
gagttcaaggaggccttcagcctcttcgacaaggatggcgacggttgcat
caccaccaaggagctcggaaccgtgatgcggtcccttgggcagaacccca
cggaggcggagctgcaggacatgatcaacgaggttgacgcggacggcaac
ggcaccatcgacttcccagagttcctgaacctgatggcgaggaagatgaa
ggacacggactcggaggaggagctcaaggaggcgttccgcgtgtttgaca
aggaccagaacggcttcatctcagcggcggagctgcgccacgtgatgacc
aacctcggggagaagctgacggacgaggaggtggacgagatgatccggga
ggcggacgtggacggcgac
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