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GrainGenes Sequence Report: BV211328

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Sequence
BV211328
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
DB Remark
Locus Source: Triticum aestivum (bread wheat)
Keyword
STS
Species
Triticum aestivum
Clone Library
Wheat var Chinese Spring Genomic DNA
Data Source
genbankRelease 145, Dec 15 2004
Title
BARC127 Wheat var Chinese Spring Genomic DNA Triticum aestivum STS genomic, sequence tagged site.
Probe
BARC127
Remark
DB_xref: taxon:4565
Feature: primer_bind: On complementary strand.
Feature: source: mol_type = 'genomic DNA'
Locus Comment: Synonyms: XBARC127; Contact: Dr. Perry Cregan; Soybean Genomics Improvement Laboratory; United States Department of Agriculture; BARC-WEST, Bldg. 006, Rm 100, 10300 Baltimore Ave., MD 20705, USA; Tel: 301-504-5070; Fax: 301-504-5728; Email: creganp@ba.ars.usda.gov; Primer A: TGCATGCACTGTCCTTTGTATT; Primer B: AAGATGCGGGCTGTTTTCTA; STS size: 197; PCR Profile:; Presoak: 95 degrees C for 3.0 minute(s); Denaturation: 95 degrees C for 45 second(s); Annealing: 52 degrees C for 45 second(s); Polymerization: 72 degrees C for 45 second(s); PCR Cycles: 35; Thermal Cycler: Perkin Elmer TC or MJ PTC-225 or MBS; Satellite 384; Protocol:; Template: 30-100 ng; Primer: each 1.5 uM; dNTPs: each 200 uM; Taq Polymerase: 0.05 units/ul; Total Vol: 10 ul; Buffer:; MgCl2: 2.5 mM; KCl: 50 mM; Tris-HCl: 10 mM; pH: 8.3.
Note: Vector: pBluescript; V-type: Plasmid; Genomic fragments cloned into pBluescript
EMBL Feature
primer_bind446467Location: 446..467
primer_bind623642Location: complement(623..642)
STS446642Location: 446..642
DNA
atggaactgaaattgccagactgcatctatttcaactttcatcgcatgtc
cagatttaataaatgtgagattgaaatatgaaatttaaatacaacagtta
tatataatgacatactgaagttgaaattaaaaatttcataccacatccat
ttcaatttcgaaaccactttcagaactgtatccattttcaagtaatgtca
gattgatatatgaaattgaaatacgactggtatatataatgtgaaattga
aactgaaatagtaaaaatctgatgactttaaaatgtatccaaatttgata
ttgtttgaaaggtcttgtcatgatgaattaaaatatataaaaagtattga
aaacaaattattattctagaaaacattaatgtttcaaaatatcacttcga
aataaaagggttgctttttgaatgagagaggaagaatataaagaatgcat
gcactgtcctttgtatttattccttcagcatataaaactctctgctctct
ctctctctctctctctctctctctctctctctatttcctgacaaaagctg
acatgcaccaagcatattcttttgtatttcttccttcagcatatgaaact
ctctttagctcacacttatccgtagaaaacagcccgcatcttgagcaaat
tgcgtccgatggatcctttagcggtatatcccgatgccggtaaaaaatgc
aattagtatggctcatggttg
BLAST
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