GrainGenes Trait Study Report: Leaf rust, GWAS on World durum collection, Aoun2016

Trait Study

Leaf rust, GWAS on World durum collection, Aoun2016

Reference

Aoun M et al. (2016) Genome-wide association mapping of leaf rust response in a durum wheat worldwide Germplasm collection. Plant Genome 9:3.

Ontology

TO:0020057

Planteome

wheat leaf rust disease resistance

Population Size

496

Population Type

durum collection sourced from 67 countries

Markers Tested

3569

QTLs Found

Comment

(Curator Note 3/2019) QTL from this paper were previously curated in GrainGenes with the names QLr.locus-. QTL from the Svevo assembly from this paper were matched to the previously curated QTL where possible via synonyms to the new names, i.e. QLr.WorldDurum-. Only a small fraction of the loci matched with respect to peak markers, and several qtl/chromosome numbers varied, and duplicates in the qtlid's exist. While this creates more qtl from the original paper, the QLr.WorldDurum- qtl reflect the locus positions on the assembly.

Curator Note (VCB, 04/2019). QTL names and markers associated with QTL in this traitstudy are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate these QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.

QTL

QLr.WorldDurum-1A.1

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