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GrainGenes Trait Study Report: Root system architecture, Unibo-DP, Maccaferri2016

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Trait Study
Root system architecture, Unibo-DP, Maccaferri2016
Reference
ReferenceMaccaferri M et al. (2016) Prioritizing quantitative trait loci for root system architecture in tetraploid wheat. Journal of Experimental Botany 67:1161-1178.
Ontology
TO:0000227Planteomeroot length
TO:0000043Planteomeroot morphology trait
TO:0000640Planteometotal root number
Population Size
183
Population Type
elite cultivars and lines from Mediterranean countries, the Southwestern USA, and Mexico
QTL Analysis Method
TASSEL software, v5.0. See Supplemental Text S2 in the paper for complete GWAS parameters.
Markers Tested
30244
QTLs Found
55
Comment
QTL names created by GrainGenes curators to align with common QTL nomenclature with synonyms to the QTL id codes in the Svevo genome assembly.
Curator Note (VCB, 04/2019). QTL names and markers associated with QTL in this traitstudy are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate these QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
QTL
QArl.UniboDP-1A
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