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GrainGenes Trait Study Report: Grain yield components, tetraploid collection, Mangini2018

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Trait Study
Grain yield components, tetraploid collection, Mangini2018
Reference
ReferenceMangini G et al. (2018) Genetic dissection of the relationships between grain yield components by genome-wide association mapping in a collection of tetraploid wheats PLoS One 13:e019016.
Ontology
TO:0000396Planteomegrain yield trait
TO:0000382Planteome1000-grain weight
TO:0002759Planteomegrain number
Population Size
233
Population Type
GWAS Collection
QTL Analysis Method
MSTAT-C, TASSEL and Mapchart 2.2. See methods in the paper for complete GWAS parameters
Markers Tested
15211
QTLs Found
72
Comment
Curator Note (VCB, 04/2019). QTL names and markers associated with QTL in this traitstudy are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate these QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
QTL
QGys.AABB2018-1A
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