GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'GMI\_ES03\_c7991\_360' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 226 through 250 of 728 records

Query	Map	Locus	Position	Distance
GMI_ES03_c7991_360	Oat-2016-SxH_23	avgbs_6K_70938	2	2
GMI_ES03_c7991_360	Oat-2016-SxH_23	avgbs_1321	2	2
GMI_ES03_c7991_360	Oat-2016-SxH_23	avgbs_81639	2	2
GMI_ES03_c7991_360	Oat-2016-SxH_23	avgbs_97834	2	2
GMI_ES03_c7991_360	Oat-2016-SxH_23	avgbs_118104	4.1	4.1
GMI_ES03_c7991_360	Oat-2016-SxH_23	avgbs_204406	6.3	6.3
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_ES14_c3870_450	9.08	7.4
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_GBS_70938	9.98	6.5
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_GBS_76935	13.09	3.4
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_ES05_c12134_99	13.74	2.7
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_ES03_c7991_360	16.44	0
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_GBS_63991	21.66	5.2
GMI_ES03_c7991_360	Oat-2017-UTauxU017-23	GMI_ES14_c8305_519	22.25	5.8
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_18284	85.4	9.9
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_178678.1.49	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_83318.1.8	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	GMI_ES03_c11673_206	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_53299	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_178678.1.60	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	GMI_ES15_c6186_167	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_631.1	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_191814.1	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	ISU563A	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_631.1.59	85.6	9.7
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_191814.1.24	85.6	9.7

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.