GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'GMI\_ES03\_c7991\_360' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 501 through 525 of 728 records

Query	Map	Locus	Position	Distance
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	GMI_ES01_c13122_349	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_72760	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_72760.1	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_37300	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_72760.1.34	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_428120	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_cluster_8739.1	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_6K_110843	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_cluster_8739.1.6	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_6K_110843.1	94.3	1
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_81211.1	94.7	0.6
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_81211.1.15	94.7	0.6
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_81211.1.24	94.7	0.6
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_cluster_23247.1.21	94.8	0.5
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_71085	94.8	0.5
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_cluster_23247.1	94.8	0.5
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	GMI_ES05_c13617_330	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_cluster_50907.1.36	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_219621.1	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_126363.1.26	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_67183.1	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_167648.1.51	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_42590.1.27	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs_93499.1.26	95.3	0
GMI_ES03_c7991_360	Oat-2018-Consensus_Mrg24	avgbs2_67299.3.36	95.3	0

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.