GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'IWB30236' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 148 records

Query	Map	Locus	Position	Distance
IWB30236	Wheat_2014_90KSNP_5B	IWB43679	81.4262	9.1
IWB30236	Wheat_2014_90KSNP_5B	IWB33510	81.4262	9.1
IWB30236	Wheat_2014_90KSNP_5B	IWB33323	81.4262	9.1
IWB30236	Wheat_2014_90KSNP_5B	IWB22240	81.4262	9.1
IWB30236	Wheat_2014_90KSNP_5B	IWB14942	81.4262	9.1
IWB30236	Wheat_2014_90KSNP_5B	IWB74320	81.4262	9.1
IWB30236	Wheat_2014_90KSNP_5B	IWB4311.2	82.6236	7.9
IWB30236	Wheat_2014_90KSNP_5B	IWB71071	82.6236	7.9
IWB30236	Wheat_2014_90KSNP_5B	IWB27834	82.6236	7.9
IWB30236	Wheat_2014_90KSNP_5B	IWB4975	82.7169	7.8
IWB30236	Wheat_2014_90KSNP_5B	IWA6895	82.9712	7.6
IWB30236	Wheat_2014_90KSNP_5B	IWA6894	82.9712	7.6
IWB30236	Wheat_2014_90KSNP_5B	IWB46400	82.9712	7.6
IWB30236	Wheat_2014_90KSNP_5B	IWB57214	89.5475	1
IWB30236	Wheat_2014_90KSNP_5B	IWB48396	89.5475	1
IWB30236	Wheat_2014_90KSNP_5B	IWB41910	89.5475	1
IWB30236	Wheat_2014_90KSNP_5B	IWB42937	89.7889	0.8
IWB30236	Wheat_2014_90KSNP_5B	IWB72094	89.9756	0.6
IWB30236	Wheat_2014_90KSNP_5B	IWB72093	89.9756	0.6
IWB30236	Wheat_2014_90KSNP_5B	IWB49598	90.349	0.2
IWB30236	Wheat_2014_90KSNP_5B	IWB48210	90.349	0.2
IWB30236	Wheat_2014_90KSNP_5B	IWB74318.2	90.349	0.2
IWB30236	Wheat_2014_90KSNP_5B	IWB41756	90.349	0.2
IWB30236	Wheat_2014_90KSNP_5B	IWB67425.2	90.349	0.2
IWB30236	Wheat_2014_90KSNP_5B	IWB3660	90.349	0.2

[ TOP | <<25 | 1 - 25 of 148 | >>25 | BOTTOM ]


GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.