*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-3B Physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Physical-3B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - 3B Physical [ View Map Set Info ]
Map Name: Physical-3B
Map Start: -46.8
Map Stop: 203.8
Features by Type:
214 baccontig
635 locus
849 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 849.       of 34 | Next
Wheat ABD - 3B Physical - Physical-3B
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cfa2191 locus -46.8 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-3B Xcfa2191-3B locus -46.8 () Automated name-based View Maps
cfp3131 locus -26 No other positions
gpw8100 locus -1.5 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-3B Xgpw8100-3B locus -3.4 () Automated name-based View Maps
cfp54 locus -0.6 No other positions
psr913 locus -0.52 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-3B Xpsr913-3B locus 11.7 () Automated name-based View Maps
wb75 locus -0.52 No other positions
wb147 locus -0.52 No other positions
wb133 locus -0.52 No other positions
psr345 locus -0.52 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-3A Xpsr345.2-3A locus 2.2 () Automated name-based View Maps
fba311 locus -0.5 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7A fba311 locus 1.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7B fba311 locus 27.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xfba311b locus 96 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2D fba311 locus 85.1 () Automated name-based View Maps
bcd907 locus -0.5 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bcd907 locus 1.3 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H bcd907 locus 0 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-3H bcd907 locus 0 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 bcd907 locus 142 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-3H bcd907 locus 0 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-3H bcd907 locus 0 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H bcd907 locus 0 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H bcd907 locus 44.48 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 BCD907 locus 65 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H bcd907 locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 BCD907 locus 66.25 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 bcd907 locus 142 (cM) Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H bcd907 locus 2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X1 BCD907 locus 37 (cM) Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 bcd907 locus 44.48 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H bcd907 locus 44.48 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 BCD907 locus 66.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28 BCD907 locus 65 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H bcd907 locus 0 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 bcd907 locus 153 (cM) Automated name-based View Maps
gwm389 locus 0 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B gwm389 locus 2.3 () Automated name-based View Maps
Wheat ABD - Wheat_2017_LRC - Wheat_2017_LRC-3B gwm389 locus 8.5 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_3 gwm389 locus 12.11 () Automated name-based View Maps
sts15 locus 0 No other positions
sts1 locus 1.83 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-3B Xsts1.1 locus 0 () Automated name-based View Maps
fbb147 locus 113.24 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xfbb147a locus 11 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A fbb147 locus 6.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B fbb147 locus 1.9 () Automated name-based View Maps
ksuG30 locus 1.83 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6B ksuG30 locus 60.3 () Automated name-based View Maps
cfp3132 locus 2.8 No other positions
barc238 locus 2.81 No other positions
cfp140 locus 3.4 No other positions
sun2 locus 3.67 Wheat ABD - Wheat, FHB QTL, Physical - Triticum-FHB-QTL-physical-3BS Xsun2-3B locus -83 () Automated name-based View Maps
darts289 locus 3.92 No other positions
darts173 locus 3.92 No other positions
darts336 locus 3.92 No other positions
darts303 locus 3.92 No other positions
darts144 locus 3.92 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.