*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat S^l^-Ae. longissima, YxY
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Aelongissima-Zhang-5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat S^l^ - Ae. longissima, YxY [ View Map Set Info ]
Map Name: Aelongissima-Zhang-5
Map Start: 4
Map Stop: 108.2
Features by Type:
16 locus
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-5
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr170(Fbpa)-5S locus 4 No other positions
Xpsr11(Glu-3)-5S locus 26 No other positions
Xubp3-5S locus 27 No other positions
Xpsr945-5S locus 27.4 No other positions
Centromere-5S locus 27.4 No other positions
Xpsr940-5S locus 27.4 No other positions
Xpsr574-5S locus 29.4 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B psr574 locus 37.2 () Automated name-based View Maps
Xcdo385-5S locus 31.4 Maize - Maize, TxCM - Zea-Ahn-2 CDO385 locus 148.05 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-24 CDO385 locus 30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 CDO385 locus 38.4 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 CDO385 locus 17 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-7 CDO385 locus 83.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 CDO385 locus 38.4 () Automated name-based View Maps
Xpsr637-5S locus 35.4 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 psr637 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2006-OxT_Pc58 - Oat-2006-OxT_Pc58_1 PSR637 locus 59.4 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 psr637 locus 0 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H psr637 locus 104 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 PSR637 locus 10.8 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 PSR637 locus 0 (cM) Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H psr637 locus 158.23 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 PSR637 locus 10.8 () Automated name-based View Maps
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-5H PSR637 locus 104.2 () Automated name-based View Maps
Xpsr145(Xdh)-5S locus 56.4 No other positions
Xpsr370-5S locus 69.4 Barley - Barley, CxH - Hordeum-CxH-5H PSR370 locus 204.85 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H PSR370 locus 166 () Automated name-based View Maps
Xpsr115(Pk)-5S locus 69.8 Oat - Oat, OxT - Oat-OxT-31 psr115 locus 143.1 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H psr115 locus 218.12 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 PSR115 locus 140.1 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H psr115 locus 258.72 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H psr115 locus 78.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 PSR115 locus 140.1 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 psr115 locus 138.5 (cM) Automated name-based View Maps
Xabc310-5S locus 69.8 Barley - Barley, BinMap 2005 - Hordeum-Bins-7H ABC310 locus 103.7 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H ABC310 locus 251.31 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H ABC310 locus 20.4 () Automated name-based View Maps
Xpsr580-5S locus 79.8 No other positions
Xpsr375-5S locus 107.8 No other positions
Xpsr567-5S locus 108.2 Wheat ABD - 3B Physical - Physical-3B psr567 locus 6.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.