*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, 2012 9KSNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley, 2012 9KSNP 2H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, 2012 9KSNP [ View Map Set Info ]
Map Name: Barley, 2012 9KSNP 2H
Map Start: 0
Map Stop: 149.5
Features by Type:
700 locus
700 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 700.       Previous | of 28 | Next
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_1073 locus 39.4 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_1073 locus 39.37 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1073 locus 38.48 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_1073 locus 38.48 () Automated name-based View Maps
POPA1_0296 locus 40.1 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0296 locus 55.21 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0296 locus 39.1 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0296 locus 39.1 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0296 locus 42.01 () Automated name-based View Maps
POPA3_0432 locus 40.8 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA3_0432 locus 41.66 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_0432 locus 41.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA3_0432 locus 44.04 () Automated name-based View Maps
POPA3_0657 locus 39.7 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA3_0657 locus 55.21 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA3_0657 locus 39.1 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA3_0657 locus 39.1 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA3_0657 locus 42.01 () Automated name-based View Maps
POPA1_0012 locus 55.9 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0012 locus 67.08 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0012 locus 58.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0012 locus 58.9 () Automated name-based View Maps
POPA1_0070 locus 55.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0070 locus 66.2 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0070 locus 58.9 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0070 locus 58.9 () Automated name-based View Maps
POPA1_0234 locus 50.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0234 locus 51.75 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0234 locus 54.27 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0234 locus 51.75 () Automated name-based View Maps
POPA1_0297 locus 50.9 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0297 locus 51.75 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0297 locus 51.75 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0297 locus 53.09 () Automated name-based View Maps
POPA1_0325 locus 53.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0325 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0325 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0325 locus 56.64 () Automated name-based View Maps
POPA1_0342 locus 41.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0342 locus 44.13 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0342 locus 55.21 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0342 locus 44.13 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0342 locus 44.82 () Automated name-based View Maps
POPA2_0500 locus 55.5 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA2_0500 locus 72.75 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA2_0500 locus 63.55 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA2_0500 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_0500 locus 58.24 () Automated name-based View Maps
POPA1_0498 locus 50.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0498 locus 49.07 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0498 locus 49.07 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0498 locus 62.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0498 locus 53.09 () Automated name-based View Maps
POPA2_0674 locus 51.8 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA2_0674 locus 51.75 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA2_0674 locus 55.46 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA2_0674 locus 65.09 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_0674 locus 51.75 () Automated name-based View Maps
POPA1_0602 locus 55.5 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0602 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0602 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0602 locus 63.55 () Automated name-based View Maps
POPA1_0733 locus 53.2 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0733 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0733 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0733 locus 56.64 () Automated name-based View Maps
POPA1_0796 locus 55.5 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0796 locus 63.55 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0796 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0796 locus 58.24 () Automated name-based View Maps
POPA2_1005 locus 50.9 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA2_1005 locus 54.92 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA2_1005 locus 50.49 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA2_1005 locus 65.09 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1005 locus 50.49 () Automated name-based View Maps
POPA2_1096 locus 52.2 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA2_1096 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1096 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA2_1096 locus 56.64 () Automated name-based View Maps
POPA2_1388 locus 53.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA2_1388 locus 54.95 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA2_1388 locus 57.29 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA2_1388 locus 54.95 () Automated name-based View Maps
POPA1_1015 locus 54.2 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_1015 locus 55.67 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1015 locus 55.67 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_1015 locus 60.89 () Automated name-based View Maps
POPA1_1046 locus 55.5 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1046 locus 58.9 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_1046 locus 58.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_1046 locus 66.2 () Automated name-based View Maps
POPA1_1133 locus 55.7 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_1133 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_1133 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_1133 locus 63.55 () Automated name-based View Maps
POPA1_0099 locus 56.4 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0099 locus 68.07 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0099 locus 58.9 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0099 locus 72.75 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0099 locus 58.9 () Automated name-based View Maps
POPA1_0330 locus 55.5 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0330 locus 63.55 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0330 locus 58.24 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0330 locus 72.75 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0330 locus 58.24 () Automated name-based View Maps
POPA1_0485 locus 55.5 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0485 locus 58.24 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0485 locus 63.55 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0485 locus 72.75 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H POPA1_0485 locus 58.24 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.