*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, 2012 9KSNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley, 2012 9KSNP 3H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, 2012 9KSNP [ View Map Set Info ]
Map Name: Barley, 2012 9KSNP 3H
Map Start: 0
Map Stop: 155
Features by Type:
595 locus
595 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 595.       Previous | of 24 | Next
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 3H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA2_0719 locus 46 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0719 locus 52.17 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0719 locus 48.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0719 locus 48.63 () Automated name-based View Maps
POPA1_0710 locus 37.7 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0710 locus 39.45 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0710 locus 39.45 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0710 locus 39.57 () Automated name-based View Maps
POPA1_0825 locus 38 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0825 locus 39.92 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0825 locus 39.45 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0825 locus 39.45 () Automated name-based View Maps
POPA2_1189 locus 46 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1189 locus 52.17 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1189 locus 48.63 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_1189 locus 54.23 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1189 locus 48.63 () Automated name-based View Maps
POPA1_1002 locus 43.1 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_1002 locus 43.99 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_1002 locus 48.02 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_1002 locus 43.99 () Automated name-based View Maps
POPA1_0114 locus 39.4 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0114 locus 42.06 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0114 locus 42.06 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0114 locus 42.31 () Automated name-based View Maps
POPA1_0968 locus 37.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0968 locus 38.91 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0968 locus 38.68 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0968 locus 38.68 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA1_0968 locus 38.46 () Automated name-based View Maps
POPA3_0064 locus 45.4 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0064 locus 50.19 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0064 locus 46.31 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0064 locus 46.31 () Automated name-based View Maps
POPA3_0474 locus 46 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0474 locus 48.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0474 locus 48.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0474 locus 59.83 () Automated name-based View Maps
POPA3_0737 locus 46 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0737 locus 48.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0737 locus 59.83 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0737 locus 48.63 () Automated name-based View Maps
POPA3_0785 locus 44.3 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0785 locus 45.54 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0785 locus 49.53 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0785 locus 45.54 () Automated name-based View Maps
POPA3_0953 locus 38 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0953 locus 41 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0953 locus 41 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA3_0953 locus 40.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0953 locus 40.99 () Automated name-based View Maps
POPA3_1475 locus 44.8 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_1475 locus 49.53 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_1475 locus 45.54 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_1475 locus 45.54 () Automated name-based View Maps
POPA1_0224 locus 51.8 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0224 locus 67.27 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0224 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0224 locus 56.4 () Automated name-based View Maps
POPA1_0349 locus 51.8 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0349 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0349 locus 67.27 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0349 locus 56.4 () Automated name-based View Maps
POPA1_0365 locus 51.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0365 locus 65.25 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0365 locus 55.57 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0365 locus 55.57 () Automated name-based View Maps
POPA1_0380 locus 49.3 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0380 locus 63.25 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0380 locus 51.73 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0380 locus 51.73 () Automated name-based View Maps
POPA1_0437 locus 51.6 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0437 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0437 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0437 locus 65.25 () Automated name-based View Maps
POPA1_0620 locus 51.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0620 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0620 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0620 locus 65.25 () Automated name-based View Maps
POPA2_0866 locus 50.5 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0866 locus 52.5 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0866 locus 59.67 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0866 locus 52.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0866 locus 63.94 () Automated name-based View Maps
POPA2_1109 locus 49.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1109 locus 51.73 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1109 locus 51.73 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1109 locus 63.25 () Automated name-based View Maps
POPA2_1129 locus 51.1 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1129 locus 63.94 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1129 locus 52.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1129 locus 52.5 () Automated name-based View Maps
POPA2_1197 locus 49.7 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1197 locus 51.73 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1197 locus 63.25 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1197 locus 51.73 () Automated name-based View Maps
POPA1_0925 locus 51.6 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA1_0925 locus 62.95 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0925 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0925 locus 66.62 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0925 locus 56.4 () Automated name-based View Maps
POPA1_0966 locus 51.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0966 locus 56.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0966 locus 65.25 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0966 locus 56.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.