*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, 2012 9KSNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley, 2012 9KSNP 3H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, 2012 9KSNP [ View Map Set Info ]
Map Name: Barley, 2012 9KSNP 3H
Map Start: 0
Map Stop: 155
Features by Type:
595 locus
595 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 595.       of 24 | Next
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 3H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0112 locus 8.5 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0112 locus 10.8 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0112 locus 10.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0112 locus 14 () Automated name-based View Maps
POPA2_0252 locus 2.7 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0252 locus 6.03 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0252 locus 8.91 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0252 locus 6.03 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0252 locus 8.82 () Automated name-based View Maps
POPA2_0529 locus 3.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0529 locus 8.23 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0529 locus 11.01 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0529 locus 8.23 () Automated name-based View Maps
POPA2_0595 locus 8.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0595 locus 12.46 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0595 locus 12.46 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0595 locus 14.91 () Automated name-based View Maps
POPA1_0559 locus 20.4 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA1_0559 locus 29.64 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0559 locus 24.99 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0559 locus 26.71 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0559 locus 24.99 () Automated name-based View Maps
POPA1_0565 locus 15.3 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA1_0565 locus 20.85 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0565 locus 19.15 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0565 locus 19.15 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0565 locus 21.58 () Automated name-based View Maps
POPA2_0742 locus 14.9 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0742 locus 20.85 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0742 locus 20.52 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0742 locus 19.15 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0742 locus 19.15 () Automated name-based View Maps
POPA1_0672 locus 36.4 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0672 locus 37.17 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0672 locus 37.62 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0672 locus 37.17 () Automated name-based View Maps
POPA2_0794 locus 23.1 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0794 locus 26.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0794 locus 26.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0794 locus 28.02 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0794 locus 29.64 () Automated name-based View Maps
POPA2_0797 locus 1.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0797 locus 5.36 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0797 locus 2.29 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0797 locus 3.29 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0797 locus 2.29 () Automated name-based View Maps
POPA2_0858 locus 0 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0858 locus 0 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0858 locus 0 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0858 locus 0 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0858 locus 0 () Automated name-based View Maps
POPA2_0976 locus 6.4 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0976 locus 9.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0976 locus 13.13 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_0976 locus 14.3 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0976 locus 9.63 () Automated name-based View Maps
POPA1_0886 locus 8.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0886 locus 10.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0886 locus 13.78 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0886 locus 10.8 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA1_0886 locus 14.3 () Automated name-based View Maps
POPA2_1398 locus 5.3 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1398 locus 8.23 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA2_1398 locus 13.21 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1398 locus 11.01 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1398 locus 8.23 () Automated name-based View Maps
POPA1_1453 locus 2.4 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_1453 locus 6.03 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_1453 locus 6.03 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA1_1453 locus 8.82 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_1453 locus 8.56 () Automated name-based View Maps
POPA1_0103 locus 1.6 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0103 locus 2.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0103 locus 2.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0103 locus 3.97 () Automated name-based View Maps
POPA1_0173 locus 2.7 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0173 locus 6.03 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0173 locus 6.03 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0173 locus 8.91 () Automated name-based View Maps
POPA3_0818 locus 7 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0818 locus 9.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0818 locus 9.63 () Automated name-based View Maps
POPA3_0920 locus 20.8 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA3_0920 locus 29.64 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0920 locus 24.99 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0920 locus 24.99 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0920 locus 26.71 () Automated name-based View Maps
POPA3_1409 locus 3.1 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA3_1409 locus 8.82 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_1409 locus 6.7 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_1409 locus 9.56 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_1409 locus 6.7 () Automated name-based View Maps
POPA3_1428 locus 0 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_1428 locus 0 () Automated name-based View Maps
Barley - Barley, SFNB QTL 2017 - Barley, SFNB QTL 2017 3H POPA3_1428 locus 0 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_1428 locus 0 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_1428 locus 0 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H POPA3_1428 locus 0 () Automated name-based View Maps
POPA2_0193 locus 39.4 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0193 locus 42.06 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0193 locus 42.31 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0193 locus 42.06 () Automated name-based View Maps
POPA2_0356 locus 46 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0356 locus 47.09 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0356 locus 50.85 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0356 locus 47.09 () Automated name-based View Maps
POPA2_0410 locus 38 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0410 locus 39.45 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0410 locus 39.45 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0410 locus 39.92 () Automated name-based View Maps
POPA1_0601 locus 45.8 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0601 locus 46.31 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0601 locus 46.31 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0601 locus 50.19 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.