*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, 2012 9KSNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley, 2012 9KSNP 4H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, 2012 9KSNP [ View Map Set Info ]
Map Name: Barley, 2012 9KSNP 4H
Map Start: 0
Map Stop: 115.2
Features by Type:
346 locus
346 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 346.       Previous | of 14 | Next
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA2_0240 locus 43.6 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0240 locus 41.2 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0240 locus 40.36 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0240 locus 44.99 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0240 locus 40.36 () Automated name-based View Maps
POPA3_0328 locus 44.9 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0328 locus 45.65 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0328 locus 40.96 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0328 locus 40.96 () Automated name-based View Maps
POPA3_0564 locus 49.7 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0564 locus 47.6 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0564 locus 47.6 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0564 locus 53.28 () Automated name-based View Maps
POPA3_0863 locus 34.3 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0863 locus 33.38 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0863 locus 33.38 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0863 locus 35.24 () Automated name-based View Maps
POPA3_0864 locus 34.3 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0864 locus 35.24 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0864 locus 33.38 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0864 locus 33.38 () Automated name-based View Maps
POPA3_0865 locus 34.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0865 locus 33.38 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0865 locus 35.24 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0865 locus 33.38 () Automated name-based View Maps
POPA3_0992 locus 43.3 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0992 locus 43.06 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0992 locus 38.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0992 locus 38.63 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA3_0992 locus 40.11 () Automated name-based View Maps
POPA1_0432 locus 50.8 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0432 locus 54.73 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0432 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0432 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0432 locus 48.5 () Automated name-based View Maps
POPA1_0577 locus 50.8 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0577 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0577 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0577 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0577 locus 54.73 () Automated name-based View Maps
POPA1_0667 locus 51 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0667 locus 48.5 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0667 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0667 locus 54.73 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0667 locus 48.5 () Automated name-based View Maps
POPA2_0782 locus 51 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0782 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0782 locus 54.94 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0782 locus 48.5 () Automated name-based View Maps
POPA1_0756 locus 50.8 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0756 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0756 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0756 locus 54.73 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0756 locus 52.27 () Automated name-based View Maps
POPA2_1071 locus 51 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_1071 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_1071 locus 54.94 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_1071 locus 48.5 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_1071 locus 52.27 () Automated name-based View Maps
POPA2_1073 locus 50.8 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_1073 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_1073 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_1073 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_1073 locus 54.73 () Automated name-based View Maps
POPA3_0777 locus 51 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA3_0777 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0777 locus 53.94 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0777 locus 49.5 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0777 locus 49.5 () Automated name-based View Maps
POPA3_0878 locus 51 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA3_0878 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA3_0878 locus 48.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA3_0878 locus 56.22 () Automated name-based View Maps
POPA2_0289 locus 52.2 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0289 locus 50.4 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0289 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0289 locus 58.2 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0289 locus 50.4 () Automated name-based View Maps
POPA2_0363 locus 54.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0363 locus 55.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0363 locus 55.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0363 locus 62.81 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0363 locus 54.44 () Automated name-based View Maps
POPA2_0482 locus 54.8 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0482 locus 59.37 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0482 locus 69.24 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0482 locus 59.37 () Automated name-based View Maps
POPA2_0610 locus 53.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0610 locus 54.25 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0610 locus 54.25 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0610 locus 54.44 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0610 locus 61.56 () Automated name-based View Maps
POPA1_0527 locus 54.5 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0527 locus 55.63 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0527 locus 54.44 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0527 locus 55.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0527 locus 65.28 () Automated name-based View Maps
POPA2_0723 locus 58.4 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0723 locus 64.31 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0723 locus 73.62 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0723 locus 63.31 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0723 locus 64.31 () Automated name-based View Maps
POPA1_0639 locus 59.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0639 locus 76.09 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0639 locus 63.31 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0639 locus 65.05 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0639 locus 65.05 () Automated name-based View Maps
POPA2_0906 locus 60.7 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0906 locus 77.87 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0906 locus 65.05 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0906 locus 65.05 () Automated name-based View Maps
POPA2_0924 locus 59.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0924 locus 75.44 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0924 locus 65.05 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0924 locus 63.31 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0924 locus 65.05 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.