*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, 2012 9KSNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley, 2012 9KSNP 5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, 2012 9KSNP [ View Map Set Info ]
Map Name: Barley, 2012 9KSNP 5H
Map Start: 0
Map Stop: 169.7
Features by Type:
800 locus
800 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 800.       of 32 | Next
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA2_0206 locus 4.2 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0206 locus 6.4 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0206 locus 6.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0206 locus 7.26 () Automated name-based View Maps
POPA2_0553 locus 0.1 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0553 locus 2.81 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0553 locus 1.91 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0553 locus 2.81 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA2_0553 locus 2.2 () Automated name-based View Maps
POPA2_0894 locus 0.1 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0894 locus 1.26 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0894 locus 2.09 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0894 locus 2.09 () Automated name-based View Maps
POPA3_0543 locus 0 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA3_0543 locus 2.81 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA3_0543 locus 1.91 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA3_0543 locus 2.81 () Automated name-based View Maps
POPA3_0591 locus 2.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA3_0591 locus 5.68 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA3_0591 locus 6.36 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA3_0591 locus 5.68 () Automated name-based View Maps
POPA3_0975 locus 1.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA3_0975 locus 4.96 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA3_0975 locus 5.48 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA3_0975 locus 4.96 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA3_0975 locus 4.15 () Automated name-based View Maps
POPA3_1023 locus 1.6 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA3_1023 locus 4.15 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA3_1023 locus 4.96 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA3_1023 locus 4.96 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA3_1023 locus 5.48 () Automated name-based View Maps
POPA1_0580 locus 30.6 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0580 locus 35.69 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0580 locus 35.69 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0580 locus 44.85 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0580 locus 29.9 () Automated name-based View Maps
POPA1_0688 locus 28.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0688 locus 34.25 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0688 locus 34.25 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0688 locus 28.98 () Automated name-based View Maps
POPA2_0873 locus 17.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0873 locus 26.28 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA2_0873 locus 34.89 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0873 locus 21.14 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0873 locus 26.28 () Automated name-based View Maps
POPA2_0883 locus 107.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA2_0883 locus 113.92 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA2_0883 locus 134.55 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA2_0883 locus 113.92 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA2_0883 locus 110.69 () Automated name-based View Maps
POPA2_1065 locus 17.6 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_1065 locus 26.28 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_1065 locus 21.14 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA2_1065 locus 34.89 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_1065 locus 26.28 () Automated name-based View Maps
POPA2_1202 locus 5.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_1202 locus 7.03 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_1202 locus 7.03 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_1202 locus 7.84 () Automated name-based View Maps
POPA2_1426 locus 18.2 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_1426 locus 27 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_1426 locus 21.68 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_1426 locus 27 () Automated name-based View Maps
POPA1_1048 locus 23.6 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_1048 locus 29.9 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_1048 locus 29.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_1048 locus 24.76 () Automated name-based View Maps
POPA1_0499 locus 29.1 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0499 locus 34.25 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0499 locus 28.98 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0499 locus 34.25 () Automated name-based View Maps
POPA1_0530 locus 29.1 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0530 locus 33.09 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0530 locus 33.09 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0530 locus 27.91 () Automated name-based View Maps
POPA3_0167 locus 17.6 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA3_0167 locus 34.89 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA3_0167 locus 26.28 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA3_0167 locus 20.48 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA3_0167 locus 26.28 () Automated name-based View Maps
POPA3_0714 locus 12 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA3_0714 locus 26.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA3_0714 locus 19.44 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA3_0714 locus 19.44 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA3_0714 locus 13.83 () Automated name-based View Maps
POPA2_0101 locus 44 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0101 locus 50.27 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0101 locus 41.45 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0101 locus 50.27 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA2_0101 locus 58.35 () Automated name-based View Maps
POPA1_0260 locus 41.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0260 locus 46.23 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0260 locus 46.23 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0260 locus 38.78 () Automated name-based View Maps
POPA2_0571 locus 41.7 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0571 locus 38.78 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0571 locus 46.23 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0571 locus 46.23 () Automated name-based View Maps
POPA1_0621 locus 31.7 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0621 locus 31.2 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0621 locus 37.11 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0621 locus 37.11 () Automated name-based View Maps
POPA2_0730 locus 34.1 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0730 locus 39.97 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0730 locus 33.71 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0730 locus 39.97 () Automated name-based View Maps
POPA2_0766 locus 41.3 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA2_0766 locus 46.23 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA2_0766 locus 38.78 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA2_0766 locus 46.23 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.